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"File system augmented tools for deep research" matching MCP servers:

  • gigaxity-deep-research

    yoloshii
    A
    license
    A
    quality
    C
    maintenance
    An open-source deep research MCP server that provides multi-source web search and synthesis with citations, enabling agents to perform citation-backed research using Qwen3-30B-A3B-Thinking and other models.
    Last updated
    6
    45
    MIT

  • synapse-research

    NimbleBrainInc
    A
    license
    A
    quality
    C
    maintenance
    A deep-research MCP server exposing a single task-augmented tool that runs GPT-Researcher with Tavily search, Anthropic Claude, and OpenAI embeddings, streaming progress via MCP tasks and Upjack entity stream.
    Last updated
    7
    MIT

  • Nervous System

    levelsofself
    A
    license
    A
    quality
    A
    maintenance
    Governance framework for LLM agents. Exposes seven mechanically-enforced rules plus tools for preflight file protection, audit-chain verification, session handoff and worklog templates, MCP config auditing, and an emergency kill switch.
    Last updated
    12
    344
    3
    MIT

  • File AI

    flyfish-dev
    A
    license
    B
    quality
    C
    maintenance
    A read-only MCP server that provides document awareness for agents by parsing local files into structured profiles, blocks, chunks, and search results, enabling agents to understand and cite document content without dealing with raw file formats.
    Last updated
    5
    101
    2
    Apache 2.0

  • MCP Deep Search

    just-every
    A
    license
    B
    quality
    B
    maintenance
    Enables deep web search across multiple providers including Google, Bing, Brave, DuckDuckGo, and Perplexity, with support for comprehensive AI-powered research using intelligent multi-engine queries.
    Last updated
    2
    504
    9
    MIT

  • deep-think-mcp

    ClintMoody
    A
    license
    B
    quality
    B
    maintenance
    An MCP server that provides a structured, persistent scratchpad for hard reasoning, with staged reasoning and self-critique, built for local models.
    Last updated
    25
    MIT

  • research-hub

    WenyuChiou
    A
    license
    B
    quality
    A
    maintenance
    AI-operable research workspace integrating Zotero, Obsidian, and NotebookLM. Search papers (arXiv/Semantic Scholar/PubMed/CrossRef), ingest into Zotero, sync per-paper notes to Obsidian, verify NotebookLM briefs. All three external tools optional.
    Last updated
    76
    41
    MIT

  • file-mcp

    yun-wulian
    F
    license
    B
    quality
    C
    maintenance
    Windows-first MCP server for deterministic file writes with atomic create, replace, and structured edit operations, preserving encoding and newline styles.
    Last updated
    10
    1

  • research-mcp

    lduda79
    F
    license
    A
    quality
    B
    maintenance
    Enables semantic search across personal PDF paper collections with page-level citations, allowing users to query their library from any MCP-capable client.
    Last updated
    9

  • browser-research-mcp

    rsi-ai-platform
    A
    license
    A
    quality
    B
    maintenance
    Browser-based research MCP server that drives a real Chromium browser via patched Playwright to access JavaScript-rendered content, dynamic tables, and login-walled dashboards. It provides tools for visiting URLs to extract DOM text and screenshots, and for performing structured data extraction using Anthropic Claude Sonnet.
    Last updated
    3
    Apache 2.0

  • quant-research-mcp

    FlawlessByte
    A
    license
    A
    quality
    A
    maintenance
    An MCP server exposing a registry of paper-backed quantitative trading methods plus a deterministic, no-LLM decision helper for reproducible trading research.
    Last updated
    13
    MIT

  • ML Research MCP

    nishide-dev
    A
    license
    A
    quality
    D
    maintenance
    Provides machine learning researchers with tools for creating publication-quality scientific visualizations, statistical plots, and 2D data representations. It streamlines the research workflow by enabling AI assistants to generate complex figures from CSV, JSON, or direct data inputs.
    Last updated
    9
    MIT