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load_structure

Load a molecular structure or coordinate file into PyMOL, returning the created object name and atom/state counts.

Instructions

Load a molecular structure or single-frame coordinate file into PyMOL.

Returns the created object name and its atom/state counts.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
pathYesAbsolute path to a structure/coordinate file (.pdb, .cif, .gro, .mol2, .sdf, .xyz).
object_nameNoOptional name for the loaded object.

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault

No arguments

Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries the full burden. It discloses that the tool loads a structure and returns object name/counts, but does not address session side effects, overwrite behavior, or error conditions. This is adequate but not rich.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two sentences, front-loaded with the action, and contains no wasted words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple load operation, the description is complete due to the output schema and full parameter descriptions, but the lack of annotations means it could mention session integration or error handling. Still, it is sufficiently complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, providing full parameter descriptions. The description adds no extra meaning beyond the schema, so the baseline score of 3 applies.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb 'Load' and resource 'molecular structure or single-frame coordinate file into PyMOL', clearly distinguishing it from trajectory-loading siblings. It also mentions the return value, making the purpose unambiguous.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The phrase 'single-frame' implies this tool is for static structures, distinguishing it from load_trajectory alternatives, but it does not explicitly name alternatives or state when not to use it.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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