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reactome-db-mcp

reactome-db-mcp

by tc2fh
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Python
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    Deploy Server
    One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

    TDQS

    A4.4/5.0

    Scored across 9 tools

    Disambiguation5/5

    Each tool has a distinct purpose: schema exploration (list_tables, describe_table, schema_overview), object retrieval (get_object, search_by_name), relationship queries (get_participants, get_pathway_events, get_referrers), and raw SQL (query). No overlapping functionality.

    Naming Consistency4/5

    Most tools follow a consistent verb_noun pattern (e.g., describe_table, get_object, list_tables). However, 'query' and 'schema_overview' are outliers—'query' is a bare verb and 'schema_overview' is noun_noun—but the overall pattern is mostly adhered to.

    Tool Count5/5

    With 9 tools, the server is well-scoped for a biological database MCP server. It provides essential operations without bloat, covering schema exploration, object retrieval, relationship navigation, and custom queries.

    Completeness5/5

    The tool set covers the primary interactions with Reactome: exploring schema, fetching objects, searching by name, retrieving participants and pathway events, reverse lookups, and arbitrary SQL queries. No obvious gaps for typical workflows.

    Maintenance

    ActivityInactive
    ResponsivenessNo recent community issues

    Resources