segment_cells_batch
Segment cells in multiple images at once. Set image paths, model, diameter, GPU, and batch size to produce masks for all inputs.
Instructions
Segment cells in multiple images in batch.
Args: image_paths: List of paths to input images model_type: Cellpose model type diameter: Expected cell diameter in pixels output_dir: Directory to save masks (default: same as input images) gpu: Whether to use GPU acceleration batch_size: Number of images to process in parallel
Returns
Dictionary with batch processing resultsInput Schema
| Name | Required | Description | Default |
|---|---|---|---|
| gpu | No | ||
| diameter | No | ||
| batch_size | No | ||
| model_type | No | cyto3 | |
| output_dir | No | ||
| image_paths | Yes |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||