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smaniches

AlphaFold Sovereign MCP

by smaniches
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Python
Remote

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    Deploy Server
    One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

    TDQS

    A3.8/5.0

    Scored across 29 tools

    Disambiguation4/5

    Descriptions do explicit work to separate near-neighbours (get_disease_targets vs get_common_disease_targets, find_drug_repurposing_candidates vs map_disease_drug_landscape, get_protein_structure vs the four structure-interpretation tools) and local-recall tools are clearly labelled as non-live. The main residual ambiguity is the variant cluster — triage_variant_3d, generate_variant_clinical_report, and classify_variant_acmg all emit variant reports, with triage_variant_3d admitting placeholders and pointing elsewhere for AlphaMissense. A careful agent can pick correctly, but these three can be confused at a glance.

    Naming Consistency5/5

    Every tool is snake_case with an action verb first (get_, query_, lookup_, search_, analyze_, score_, compute_, compare_, find_, generate_, classify_, synthesize_, export_, resolve_, map_, detect_, triage_), and resource nouns are reused consistently across the set. No camelCase or mixed convention appears.

    Tool Count3/5

    At 29 tools this is the heavy end, though the scope genuinely spans structural analysis, MONDO/HPO ontology, Open Targets/ChEMBL drug work, variant interpretation, and a local knowledge graph. Several local-store utilities (get_knowledge_graph_stats, query_variant_database, query_protein_database, export_research_dataset) are ancillary and inflate the surface for what is largely a read-only research server.

    Completeness3/5

    The read/analysis surface is broad and well covered, from structure retrieval through druggability, repurposing, and disease-phenotype traversal. However, the local knowledge graph is queried and exported but never written to — the storage API the descriptions reference is not exposed, leaving a notable dead end — and there is no sequence-level comparison or ligand-level tooling.

    Maintenance

    ActivityActive
    ResponsivenessUnresponsive

    Resources