PDF Reader MCP Server

English | 日本語

An MCP (Model Context Protocol) server specialized in deciphering PDF internal structures.

While typical PDF MCP servers are thin wrappers for text extraction, this project focuses on reading and analyzing the internal structure of PDF documents. Pair it with pdf-spec-mcp for specification-aware structural analysis and validation.

PDF family

pdf-reader-mcp inspects signature structure (inspect_signatures); for cryptographic signature verification, trust/revocation evaluation, and PDF/A conformance validation, use pdf-verify-mcp.

Features

18 tools organized into three tiers:

Tier 1: Basic Operations

Tier 2: Structure Inspection

Tier 3: Validation & Analysis

Related MCP server: PDF Reader MCP Server

Installation

npx (recommended)

npx @shuji-bonji/pdf-reader-mcp@latest

Claude Desktop

Add to your claude_desktop_config.json:

{
  "mcpServers": {
    "pdf-reader-mcp": {
      "command": "npx",
      "args": ["-y", "@shuji-bonji/pdf-reader-mcp@latest"]
    }
  }
}

Use @latest. The -y flag in npx -y <pkg> only skips the install prompt — it does not check for updates. Without @latest, npx keeps running whichever version it cached the first time, so new releases never reach you. If you suspect you are on a stale version, run rm -rf ~/.npm/_npx and restart your client.

Claude Code

claude mcp add pdf-reader-mcp -- npx -y @shuji-bonji/pdf-reader-mcp@latest

From Source

git clone https://github.com/shuji-bonji/pdf-reader-mcp.git
cd pdf-reader-mcp
npm install
npm run build

Usage Examples

Get Page Count

get_page_count({ file_path: "/path/to/document.pdf" })
→ 42

Search Text

search_text({
  file_path: "/path/to/spec.pdf",
  query: "digital signature",
  pages: "1-20",
  max_results: 10
})
→ Found 5 matches (page 3, 7, 12, 15, 18)

Summarize

summarize({ file_path: "/path/to/document.pdf" })
→ | Pages | 42 |
  | PDF Version | 2.0 |
  | Tagged | Yes |
  | Signatures | No |
  | Images | 15 |

Validate Tagged Structure (PDF/UA)

validate_tagged({ file_path: "/path/to/document.pdf" })
→ ✅ [TAG-001] Document is marked as tagged
  ✅ [TAG-002] Structure tree root exists
  ⚠️ [TAG-004] Heading hierarchy has gaps: H1, H3
  ❌ [TAG-005] Document has 3 image(s) but no Figure tags

Validate Metadata

validate_metadata({ file_path: "/path/to/document.pdf" })
→ ✅ [META-001] Title: "Annual Report 2025"
  ⚠️ [META-002] Author is missing
  ✅ [META-006] PDF version: 2.0

Compare Structure

compare_structure({
  file_path_1: "/path/to/v1.pdf",
  file_path_2: "/path/to/v2.pdf"
})
→ | Page Count  | 10 | 12 | ❌ |
  | PDF Version | 1.7 | 2.0 | ❌ |
  | Tagged      | true | true | ✅ |

Extract Structured Text (Tagged PDF, logical order)

extract_structured_text({ file_path: "/path/to/report.pdf", pages: "1-2" })
→ # Structured Text
  - **Tagged**: Yes / **Language**: en-US / **Elements**: 7

  ## Logical Content Order

  - **Document** (pages 1–2)
    - **H1** (page 1) — Quarterly Report
    - **P** (pages 1–2) — This paragraph begins on page one and continues on page two.
    - **Table** (page 1)
      | Item | Amount |
      |---|---|
      | Sales | 100 |
    - **Figure** (page 2) — *alt:* A bar chart of sales

This answers "what is the text of the H1?" — which read_text (flat, coordinate order) cannot. Order is a depth-first traversal of the structure tree (ISO 32000-2 §14.8.2.5). /ActualText replaces the glyphs (§14.9.4), /Alt stays out of the body text (§14.9.3), list labels are reported separately, and an element spanning a page break stays ONE element. Use roles: ["H1", "H2"] to pull an outline. Untagged PDFs return isTagged: false with a reason — nothing is guessed from coordinates.

include_bbox: where the element is drawn

extract_structured_text({ file_path: "/doc.pdf", roles: ["P"], include_bbox: true })
→ - **P** (page 1) — Measured paragraph
    - *bbox* p1 `(50.0, 297.5, 161.4, 308.6)` — text-extent
  - **Figure** (page 1)
    - *bbox* p1 `(50.0, 150.0, 110.0, 190.0)` — layout-attribute-bbox

Rectangles are in PDF default user space (origin bottom-left, pt, normalised) — exactly what pdf-writer-mcp add_annotation takes, so "annotate this paragraph" needs no coordinate conversion in between. /Rotate and a shifted /CropBox do not move them.

basis says how strong the claim is, and the two are different in kind:

An element spanning pages gets ONE RECTANGLE PER PAGE — merging them would put content on a page it is not on. An element with no rectangle says why in boxNote rather than returning a zero-sized one.

A declaration is reported as-is, and cross-checked. Files state nonsense: the cover Figure of both Well-Tagged PDF 1.0 and the Tagged PDF Best Practice Guide declares /BBox [-32768 -32768 32767 32767] — int16 sentinels where a rectangle should be — and PDF32000_2008 has 131 of its 545 declarations reaching past the page edge. Since this output is meant to go straight into add_annotation, a declaration is checked against the page box (§7.7.3.3) and against the element's own text; either contradiction is reported in boxNote, with the rectangle still returned unaltered.

Measured against independent ground truth: on Well-Tagged PDF (WTPDF) 1.0, the 166 Link structure elements were compared with the 173 Link annotation /Rect values the producer placed for the same links — median IoU 0.972, none disjoint.

Extract Tables (Tagged PDF)

extract_tables({ file_path: "/path/to/kaisei-tsutatsu.pdf", pages: "1" })
→ # Extracted Tables
  - **Tagged**: Yes / **Pages Scanned**: 1 / **Tables Found**: 1

  ## Table 1 — Page 1

  | 改正後 | 改正前 |
  | --- | --- |
  | …第２条第 16 項《定義》… | …第２条第 15 項《定義》… |

A table that continues across a page break is reported as ONE table — pages is an array (e.g. ## Table 3 — Pages 5–7), and a table touching the requested pages range is returned whole. Cell text honours /ActualText replacements (as do read_text and search_text since #18). Untagged PDFs return an empty result with a note recommending the column-aware fallback below.

Read Untagged Multi-Column PDF

read_text({ file_path: "/path/to/older-shinkyu.pdf", split_columns: 2 })
→ // Plain Y-sort would interleave columns:
//   "改正後セル1   改正前セル1\n 改正後セル2   改正前セル2..."
//
// With split_columns: 2 the left column is emitted first, then the right:
//   "改正後セル1\n改正後セル2\n…\n\n改正前セル1\n改正前セル2\n…"

Use split_columns: 2 | 3 for untagged multi-column PDFs. For Tagged PDFs with proper <Table> markup, extract_tables (above) is preferred.

Compact Whitespace (Japanese Forms)

read_text({ file_path: "/path/to/form.pdf", compact_whitespace: true })
→ // Original PDF uses U+3000 fullwidth space as visual indentation:
//   " (   )   自   年   月   日   法   有 （   年   月   日）   有   有"
//
// With compact_whitespace: true:
//   "( ) 自 年 月 日 法 有 （ 年 月 日） 有 有"
//
// Empirically reduces character count by ~40% on form PDFs.

compact_whitespace is orthogonal to split_columns — both can be combined.

Tech Stack

• TypeScript + MCP TypeScript SDK

• pdfjs-dist (Mozilla) — text/image extraction, tag tree, annotations

• pdf-lib — low-level object structure analysis

• Vitest — unit + E2E testing (171 tests)

• Biome — linting + formatting

• Zod — input validation

Testing

npm test              # Run all tests (unit: 39 tests)
npm run test:e2e      # E2E tests only (132 tests)
npm run test:watch    # Watch mode

Architecture

pdf-reader-mcp/
├── src/
│   ├── index.ts              # MCP Server entry point
│   ├── constants.ts          # Shared constants
│   ├── types.ts              # Type definitions
│   ├── tools/
│   │   ├── tier1/            # Basic tools (7)
│   │   ├── tier2/            # Structure inspection (6)
│   │   ├── tier3/            # Validation & analysis (3)
│   │   └── index.ts          # Tool registration
│   ├── services/
│   │   ├── pdfjs-service.ts        # pdfjs-dist wrapper (parallel page processing)
│   │   ├── pdflib-service.ts       # pdf-lib wrapper
│   │   ├── validation-service.ts   # Validation & comparison logic
│   │   └── url-fetcher.ts          # URL fetching
│   ├── schemas/              # Zod validation schemas
│   └── utils/
│       ├── pdf-helpers.ts    # PDF utilities (page range parsing, file I/O)
│       ├── batch-processor.ts # Batch processing for large PDFs
│       ├── formatter.ts      # Output formatting
│       └── error-handler.ts  # Error handling
└── tests/
    ├── tier1/                # Unit tests
    └── e2e/                  # E2E tests (9 suites, 132 tests)

Error Contract (houki-hub family)

Since v0.6.0, this MCP returns structured errors that follow the houki-hub family error contract, sharing a unified code vocabulary across the family. Combined with houki-egov-mcp / houki-nta-mcp, an LLM or Skill layer can interpret errors with consistent logic.

• docs/ERROR-CODES.md — error code vocabulary (houki-research-skill)

• docs/ERROR-HANDLING.md — handling policy / next_actions templates

Implementation is independent — no dependency on houki-abbreviations or other family packages. The reference implementation is houki-egov-mcp/src/errors.ts; pdf-reader-mcp's local definition is in src/errors.ts.

On error, every tool returns isError: true and the JSON-stringified LawServiceError in content[0].text:

{
  "error": "The file does not appear to be a valid PDF.",
  "code": "INVALID_PDF",
  "hint": "ファイルが破損していないか確認してください。",
  "next_actions": [
    {
      "action": "inspect_structure",
      "reason": "PDF が壊れている可能性があります。Catalog / Pages 等の構造を確認してください"
    }
  ],
  "detail": { "cause": "Invalid PDF structure" }
}

Codes used by pdf-reader-mcp

Migration note (v0.5.x → v0.6.0)

旧 v0.5.x までは content[0].text に Error: ...\n\nSuggestion: ... という人間可読文字列を入れていました。v0.6.0 では同じ場所に JSON 文字列 が入ります。LLM 側でテキスト解釈に依存していた場合は、JSON.parse(content[0].text) での解釈に切り替えてください。isError: true フラグで構造化エラーかどうかを判定できます。

Pairing with pdf-spec-mcp

pdf-spec-mcp provides PDF specification knowledge (ISO 32000-2, etc.). With both servers enabled, an LLM can perform specification-aware workflows:

1. summarize — get a PDF overview

2. inspect_tags — examine the tag structure

3. pdf-spec-mcp get_requirements — fetch PDF/UA requirements

4. validate_tagged — check conformance

5. compare_structure — diff before/after fixes

License

MIT