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Render Molecule

render_molecule

Visualize chemical structures from SMILES notation as interactive 2D diagrams, with computed molecular properties like molecular weight, LogP, and TPSA.

Instructions

Renders an interactive 2D structure diagram of a molecule from its SMILES notation. Displays the molecule image along with computed molecular properties (molecular weight, LogP, H-bond donors/acceptors, TPSA, etc.). Use this whenever a user asks to see, visualize, draw, or display a chemical structure.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
smilesYesSMILES notation of the molecule (e.g. 'CCO' for ethanol, 'c1ccccc1' for benzene, 'CC(=O)Oc1ccccc1C(=O)O' for aspirin)
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description carries full burden. It discloses the interactive 2D output and computed properties. It doesn't mention error handling for invalid SMILES, but for a rendering tool this behavior is reasonably implied and covered by the description's output details.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two concise sentences: first states the core function, second embellishes with output details and usage trigger. Every sentence earns its place with no redundancy.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a single-parameter tool with no output schema and no annotations, the description is self-sufficient. It explains what is rendered, what properties are shown, and when to invoke it. No critical information is missing.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100% with detailed examples for the 'smiles' parameter. The description adds contextual meaning by tying SMILES to the rendering purpose, but does not go beyond what the schema already provides. Baseline 3 is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states the tool renders an interactive 2D structure diagram from SMILES, with specific verb (renders) and resource (molecule structure). It also enumerates output properties, making the purpose unambiguous even without siblings.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly states when to use: 'whenever a user asks to see, visualize, draw, or display a chemical structure.' Since no sibling tools exist, this provides clear, actionable usage guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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