Related Servers

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Related Servers

• Cell Annotation MCP

  haoyunLi

  F

  license

  -Not graded

  quality

  C

  maintenance

  Enables evidence-traceable annotation of human and mouse single-cell data by resolving ontology terms, searching versioned marker and reference-atlas indexes, ranking and auditing candidate cell types, and exporting sealed decision bundles with provenance.

  Updated 6 days ago (2026-09-10 17:23 UTC)

  1

  -

• cxg-census-mcp

  MaxMLang

  A

  license

  B

  quality

  A

  maintenance

  Enables LLM agents to query the CZ CELLxGENE Census single-cell atlas with ontology-aware filters, cost caps, and full provenance, allowing natural language questions about cell types, tissues, and gene expression.

  Updated 9 days ago (2026-09-08 10:05 UTC)

  13

  25 PyPI

  MIT

• CellTypist MCP

  hyennnnnnn

  A

  license

  -Not graded

  quality

  D

  maintenance

  Enables automated cell type annotation in scRNA-seq analysis using CellTypist models, with tools for listing, downloading, training, and annotating cell types via natural language.

  Updated a year ago (2025-10-13 05:32 UTC)

  MIT

• Liana-MCP

  scmcphub

  F

  license

  -Not graded

  quality

  C

  maintenance

  Enables natural language interface for single-cell RNA-Seq analysis using Liana. Supports reading/writing scRNA-Seq data, cell-cell communication analysis, and visualization through circle plots and dotplots.

  Updated a year ago (2025-06-27 12:35 UTC)

  1

  -

• scvi-tools MCP Server

  hyennnnnnn

  A

  license

  -Not graded

  quality

  D

  maintenance

  Enables deep probabilistic analysis of single-cell omics data using scvi-tools through natural language. Supports SCVI for scRNA-seq analysis, SCANVI for cell type annotation, TOTALVI for multi-modal RNA/protein data, and PEAKVI for scATAC-seq analysis.

  Updated a year ago (2025-10-14 05:41 UTC)

  MIT

• cellrank-mcp

  scmcphub

  F

  license

  -Not graded

  quality

  C

  maintenance

  Enables natural language interaction for scRNA-Seq analysis including preprocessing, clustering, and visualization using the CellRank library. It allows users and agents to perform complex genomic data tasks through standard MCP clients and frameworks.

  Updated a year ago (2025-06-27 12:03 UTC)

  2

  -