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MCP GeneLab Server

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Python
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    TDQS

    A3.9/5.0

    Scored across 12 tools

    Disambiguation4/5

    Most tools have clearly distinct purposes, especially the four DEG-related tools (find, common, venn, volcano) each target different outputs. However, 'create_chat_transcript' is an outlier unrelated to gene expression analysis, and 'clean_mermaid_diagram' and 'visualize_schema' both deal with Mermaid diagrams, causing slight ambiguity.

    Naming Consistency4/5

    The tools mostly follow a snake_case verb_noun pattern (e.g., clean_mermaid_diagram, select_assays). One exception is 'query', which is just a plain verb without a noun. Overall, the pattern is consistent and predictable.

    Tool Count5/5

    With 12 tools, the server covers a reasonable scope for a gene expression analysis platform. Each tool contributes to data retrieval, selection, analysis, or visualization, without being overwhelming or too sparse.

    Completeness4/5

    Core workflows such as finding differentially expressed genes, comparing assays via Venn diagrams, and generating volcano plots are present. However, the toolset lacks direct support for downloading raw data or exploring beyond the predefined thresholds, and the inclusion of unrelated tools like 'create_chat_transcript' does not fill domain gaps.

    Maintenance

    ActivityStale
    ResponsivenessNo issues

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