Upload a whole slide
upload_slideUpload whole-slide files (.svs, .ndpi, pyramidal TIFF, up to 5 GB) from the server host and start background analysis automatically.
Instructions
Upload a whole-slide file (.svs, .ndpi, pyramidal .tif/.tiff, up to 5 GB) from the machine running this server, and start its analysis in the background (see analyze_slide).
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| name | No | Display name; defaults to the file name. | |
| path | Yes | Absolute path of a whole-slide file (.svs, .ndpi or pyramidal .tif / .ome.tif, up to 5 GB) on the machine running this server. | |
| analyze | No | Start a sample analysis (analyze_slide) as soon as the upload finishes. | |
| category | No | Category to file the slide under (list_images filters by it). | |
| max_tiles | No | Tiles to analyse for a sample (default 12 with cell types, 16 without). | |
| cell_types | No | Also type each nucleus (tumour, immune, connective tissue, dead, normal epithelial); default on for a sample, off for full coverage. |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||