F
license-
qualityB
maintenanceMCP server for querying BV-BRC biological data, submitting analysis jobs (assembly, annotation, BLAST, etc.), and managing workspace files via natural language.
mcp-pride
by pipeworx-io
Click on "Install Server".
Wait a few minutes for the server to deploy. Once ready, it will show a "Started" state.
In the chat, type
@followed by the MCP server name and your instructions, e.g., "@mcp-pridefind proteomics datasets for human brain tissue"
That's it! The server will respond to your query, and you can continue using it as needed.
Here is a step-by-step guide with screenshots.
mcp-pride
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.
Part of Pipeworx — an MCP gateway connecting AI agents to 1394+ live data sources.
Tools
Tool | Description |
| Search EBI PRIDE Archive — the largest public proteomics/mass-spectrometry dataset repository — for projects by keyword (disease, organism, technique, protein, instrument). Returns matching project accessions with title, organisms, diseases, and instruments. Keyless. |
| Get full metadata for one PRIDE Archive proteomics project by accession (e.g. "PXD000001"): title, description, sample-processing and data-processing protocols, organisms, organism parts, diseases, instruments, keywords, and DOI. |
Related MCP server: BioMCP
Quick Start
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"pride": {
"url": "https://gateway.pipeworx.io/pride/mcp"
}
}
}Or connect to the full Pipeworx gateway for access to all 1394+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}Using with ask_pipeworx
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Pride data" })The gateway picks the right tool and fills the arguments automatically.
More
License
MIT
This server cannot be installed
Maintenance
–Maintainers
–Response time
–Release cycle
–Releases (12mo)
Commit activity
Resources
Unclaimed servers have limited discoverability.
Looking for Admin?
If you are the server author, to access and configure the admin panel.
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