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pipeworx-io

Open Tree of Life MCP

by pipeworx-io

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    • A
      license
      Not graded
      quality
      B
      maintenance
      Enables AI agents to resolve scientific names to Taxonomic Serial Numbers, traverse complete taxonomic lineages from kingdom to children, and retrieve vernacular names in all languages from an authoritative US-government taxonomy.
      323 npm
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    • A
      license
      Not graded
      quality
      B
      maintenance
      Enables searching and retrieving taxonomic information from the Encyclopedia of Life, including taxon pages, scientific names, and hierarchical classifications.
      1 npm
      MIT
    • A
      license
      Not graded
      quality
      B
      maintenance
      Enables AI agents to search roughly 150 million digitized natural-history museum specimen records (plants, animals, fossils) from US collections, filtered by taxonomy and locality, and to retrieve the full normalized record for any single specimen by its uuid. It also returns taxonomic or geographic specimen counts grouped by a chosen field, optionally narrowed by the same filters, with no API key required.
      330 npm
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    • A
      license
      Not graded
      quality
      C
      maintenance
      Enables querying NCBI genome assemblies, gene details with cross-references, and taxonomy trees with per-node assembly and gene counts, providing structured answers about genomes, genes, and taxonomy.
      247 npm
      MIT
    • A
      license
      Not graded
      quality
      B
      maintenance
      Enables AI agents to search EBI BioSamples metadata for biological samples such as cell lines, tissues, and organisms by free-text keyword, and to fetch individual records by accession to retrieve taxId, organism, and characteristics like tissue, sex, and cell type. It can run as a hosted gateway endpoint or locally over stdio via npx.
      331 npm
      MIT