Related Servers

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Related Servers

• PubTator 3 MCP

  pipeworx-io

  A

  license

  -Not graded

  quality

  C

  maintenance

  Enables AI agents to resolve genes, diseases, chemicals, variants and species to normalized ids, search ~36M PubMed abstracts and PMC full texts by free text or entity, and retrieve the machine-extracted relations between them with the supporting sentences and PMIDs. Supports auditing individual relations with full evidence passages and pulling per-article entity annotations with character offsets.

  Updated 10 days ago (2026-10-07 23:43 UTC)

  216 npm

  MIT

• EBI BioSamples MCP

  pipeworx-io

  A

  license

  -Not graded

  quality

  C

  maintenance

  Enables AI agents to search EBI BioSamples metadata for biological samples such as cell lines, tissues, and organisms by free-text keyword, and to fetch individual records by accession to retrieve taxId, organism, and characteristics like tissue, sex, and cell type. It can run as a hosted gateway endpoint or locally over stdio via npx.

  Updated 22 days ago (2026-09-25 22:10 UTC)

  11 npm

  MIT

• europepmc-mcp-server

  QuentinCody

  F

  license

  -Not graded

  quality

  B

  maintenance

  Enables searching and retrieving biomedical literature from Europe PMC, including abstracts, full-text (JATS XML), text-mined annotations, citations, references, and database cross-links, through natural language queries and automated data staging.

  Updated 2 months ago (2026-08-29 09:15 UTC)

  -

• biodatafinder

  fmdelgado

  A

  license

  A

  quality

  C

  maintenance

  Enables users to search multiple public life-science data repositories (GEO, ENA, CELLxGENE, PRIDE, DataCite) with a single query, returning a unified ranked list of datasets with ontology-expanded terms and per-source error reporting.

  Updated 24 days ago (2026-09-24 12:54 UTC)

  3

  MIT

• mgnify

  pipeworx-io

  A

  license

  -Not graded

  quality

  C

  maintenance

  Enables search and access to MGnify public microbiome studies, biome vocabulary, and ~57,000 MAGs and isolate genomes with completeness, contamination, and GTDB taxonomy.

  Updated 21 days ago (2026-09-26 19:44 UTC)

  14 npm

  MIT
• 

  @pipeworx/enaofficial

  pipeworx-io

  A

  license

  -Not graded

  quality

  C

  maintenance

  Enables searching ENA's public sequencing data by organism, study, platform, country or date, retrieving FASTQ/BAM download URLs and checksums, and discovering available result types and fields.

  Updated 22 days ago (2026-09-25 23:45 UTC)

  6 npm

  MIT