Skip to main content
Glama
Sign In
EBI BioSamples MCP

EBI BioSamples MCP

by pipeworx-io
OverviewSchemaSourceRelated ServersDiscussionsAdmin
JavaScript
Hybrid

Related Servers

Alternatives to EBI BioSamples MCP

No user-submitted related servers found.

    Related Servers

    • QuickGO MCP Server

      pipeworx-io
      A
      license
      Not graded
      quality
      B
      maintenance
      Enables AI agents to browse the Gene Ontology through the EBI QuickGO API, including keyword search for GO terms, retrieval of a term's name, aspect, definition and synonyms by id, and listing the GO annotations tied to a UniProt accession. Runs keyless over HTTP or as a local stdio server, with an optional gateway route that lets plain-English questions be answered without choosing tools manually.
      221 npm
      MIT

    • PDBe MCP Server

      pipeworx-io
      A
      license
      Not graded
      quality
      B
      maintenance
      Enables AI agents to query Protein Data Bank in Europe (EBI) structural data by 4-character PDB ID, retrieving entry summaries, molecule/entity listings with chain lengths, and SIFTS cross-database mappings to UniProt accessions and residue ranges. Runs as a hosted gateway endpoint or a local stdio server with no authentication required.
      215 npm
      MIT

    • pubmed-mcp-server

      phamdunn2767
      A
      license
      Not graded
      quality
      A
      maintenance
      Enables searching PubMed and Europe PMC, fetching article metadata and full text from PMC, Europe PMC, or Unpaywall, resolving citations and identifiers, exploring related articles, and grounding queries in MeSH vocabulary. Runs over stdio, local Streamable HTTP, or a hosted endpoint, exposing 11 tools, a database-info resource, and a research-plan prompt.
      9 npm
      MIT

    • Mesh

      pipeworx-io
      A
      license
      Not graded
      quality
      B
      maintenance
      Enables AI agents to look up NLM Medical Subject Headings: search descriptors by disease, drug, or concept term, fetch a descriptor's preferred label, synonyms, qualifiers, and related headings, and resolve everyday free-text terms to their canonical MeSH heading for PubMed indexing. Runs keyless via a hosted gateway endpoint or as a local stdio server.
      500 npm
      MIT

    • mcp-intact

      pipeworx-io
      A
      license
      Not graded
      quality
      B
      maintenance
      Enables AI agents to look up molecular interactions from the EBI IntAct database by gene/protein name or UniProt ID, returning detection method, interaction type, organism, PubMed reference, and MI confidence score, along with fast interaction counts. It is keyless and available either through a hosted MCP endpoint, a plain HTTP API, or a local stdio server.
      467 npm
      MIT

    • @cyanheads/pubmed-mcp-server

      eLambert2560
      A
      license
      Not graded
      quality
      A
      maintenance
      Enables searching PubMed, PubMed Central, and Europe PMC and fetching article metadata, full text, citations, related works, MeSH terms, and identifier conversions. Runs over STDIO or Streamable HTTP and exposes 11 tools, a database info resource, and a research-planning prompt.
      9 npm
      MIT

    This server cannot be deployed

    One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

    Maintenance

    ActivityActive
    ResponsivenessNo recent community issues

    Resources