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Alternatives to EBI BioSamples MCP

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    Related Servers

    • A
      license
      Not graded
      quality
      B
      maintenance
      Enables AI agents to browse the Gene Ontology through the EBI QuickGO API, including keyword search for GO terms, retrieval of a term's name, aspect, definition and synonyms by id, and listing the GO annotations tied to a UniProt accession. Runs keyless over HTTP or as a local stdio server, with an optional gateway route that lets plain-English questions be answered without choosing tools manually.
      32 npm
      MIT
    • A
      license
      Not graded
      quality
      B
      maintenance
      Enables AI agents to query Protein Data Bank in Europe (EBI) structural data by 4-character PDB ID, retrieving entry summaries, molecule/entity listings with chain lengths, and SIFTS cross-database mappings to UniProt accessions and residue ranges. Runs as a hosted gateway endpoint or a local stdio server with no authentication required.
      17 npm
      MIT
    • A
      license
      Not graded
      quality
      B
      maintenance
      Enables AI agents to look up NLM Medical Subject Headings: search descriptors by disease, drug, or concept term, fetch a descriptor's preferred label, synonyms, qualifiers, and related headings, and resolve everyday free-text terms to their canonical MeSH heading for PubMed indexing. Runs keyless via a hosted gateway endpoint or as a local stdio server.
      19 npm
      MIT
    • A
      license
      Not graded
      quality
      B
      maintenance
      Enables AI agents to look up molecular interactions from the EBI IntAct database by gene/protein name or UniProt ID, returning detection method, interaction type, organism, PubMed reference, and MI confidence score, along with fast interaction counts. It is keyless and available either through a hosted MCP endpoint, a plain HTTP API, or a local stdio server.
      17 npm
      MIT
    • A
      license
      Not graded
      quality
      C
      maintenance
      Enables AI agents to resolve genes, diseases, chemicals, variants and species to normalized ids, search ~36M PubMed abstracts and PMC full texts by free text or entity, and retrieve the machine-extracted relations between them with the supporting sentences and PMIDs. Supports auditing individual relations with full evidence passages and pulling per-article entity annotations with character offsets.
      216 npm
      MIT
    • A
      license
      Not graded
      quality
      B
      maintenance
      Enables searching EBI BioStudies, a keyless database of biological study descriptions, by keyword and retrieving full metadata for a single study by accession, including title, abstract, release date, and link counts. Results tie studies across EBI archives such as ArrayExpress and PRIDE, so agents can locate and inspect study records without authentication.
      20 npm
      MIT