Skip to main content
Glama
Sign In
EMBL-EBI MCP Server

EMBL-EBI MCP Server

by openpharma-org
OverviewSchemaSourceRelated ServersDiscussionsAdmin
JavaScript
Remote

Related Servers

Alternatives to EMBL-EBI MCP Server

No user-submitted related servers found.

    Related Servers

    • mcp-interpro

      pipeworx-io
      A
      license
      Not graded
      quality
      B
      maintenance
      This server provides access to InterPro protein family, domain, and functional-site classification data from EBI. It allows querying protein annotations through natural language or direct tool calls.
      522 npm
      MIT

    • UniProt MCP Server

      josefdc
      A
      license
      B
      quality
      D
      maintenance
      Provides seamless access to UniProtKB protein database, enabling queries for protein entries, sequences, Gene Ontology annotations, full-text search, and ID mapping across 200+ database types.
      5
      2
      MIT

    • mcp-uniprot

      pipeworx-io
      A
      license
      Not graded
      quality
      B
      maintenance
      Provides access to UniProt protein sequence and function knowledge base, enabling search and retrieval of protein entries, proteomes, taxonomy, and feature annotations.
      197 npm
      MIT

    • @cyanheads/uniprot-mcp-server

      cyanheads
      A
      license
      Not graded
      quality
      A
      maintenance
      Search UniProtKB by protein function, fetch curated records, map IDs across databases, and pull reference proteomes, taxonomy, and sequences via MCP. Supports both STDIO and Streamable HTTP transports.
      204 npm
      2
      Apache 2.0

    • interpro-mcp-server

      cyanheads
      A
      license
      Not graded
      quality
      A
      maintenance
      Enables agents to search protein family, domain, and functional-site entries, read entry metadata and clan relationships, map a UniProt protein's annotations to residue coordinates, and find proteins carrying a given signature. Runs over STDIO or Streamable HTTP with no credentials required.
      739 npm
      1
      Apache 2.0
    Deploy Server
    One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

    TDQS

    A3.7/5.0

    Scored across 1 tool

    Disambiguation5/5

    Only one tool exists, so there is no possibility of confusion between tools. The methods within the tool are clearly distinct and cover separate domains or operations.

    Naming Consistency4/5

    The method names follow a consistent verb_noun pattern (e.g., search_interpro, get_protein_features), but the tool name 'embl_data' is a generic noun that does not convey an action or purpose, resulting in minor inconsistency.

    Tool Count2/5

    With only a single tool for a wide range of bioinformatics APIs, the tool surface is too thin. The multiple methods effectively act as sub-tools, but consolidating them into one tool makes the server feel under-scoped and reduces usability.

    Completeness4/5

    The methods cover essential read operations (search and retrieval) for major EMBL-EBI resources like InterPro, Pfam, UniProt features, and NCBI taxonomy. Minor gaps exist (e.g., no direct method to fetch a Pfam entry by ID), but the core querying needs are addressed.

    Maintenance

    ActivityInactive
    ResponsivenessNo issues

    Resources