Skip to main content
Glama
openpharma-org

EMBL-EBI MCP Server

by openpharma-org
OverviewSchemaSourceRelated ServersDiscussionsAdmin
JavaScript
Remote

Related Servers

Alternatives to EMBL-EBI MCP Server

No user-submitted related servers found.

    Related Servers

    • mcp-interpro

      pipeworx-io
      A
      license
      Not graded
      quality
      B
      maintenance
      This server provides access to InterPro protein family, domain, and functional-site classification data from EBI. It allows querying protein annotations through natural language or direct tool calls.
      21 npm
      MIT

    • UniProt MCP Server

      josefdc
      A
      license
      B
      quality
      D
      maintenance
      Provides seamless access to UniProtKB protein database, enabling queries for protein entries, sequences, Gene Ontology annotations, full-text search, and ID mapping across 200+ database types.
      5
      19 PyPI
      2
      MIT

    • mcp-uniprot

      pipeworx-io
      A
      license
      Not graded
      quality
      B
      maintenance
      Provides access to UniProt protein sequence and function knowledge base, enabling search and retrieval of protein entries, proteomes, taxonomy, and feature annotations.
      31 npm
      MIT

    • @cyanheads/uniprot-mcp-server

      cyanheads
      A
      license
      Not graded
      quality
      A
      maintenance
      Search UniProtKB by protein function, fetch curated records, map IDs across databases, and pull reference proteomes, taxonomy, and sequences via MCP. Supports both STDIO and Streamable HTTP transports.
      106 npm
      2
      Apache 2.0

    • EBI Complex Portal MCP

      pipeworx-io
      A
      license
      Not graded
      quality
      B
      maintenance
      Enables searching a manually curated database of stable macromolecular protein complexes by protein or complex name, gene, GO term, or biological process, and fetching individual records by accession to retrieve subunits with UniProt identifiers, biological roles, and stoichiometry. Complements UniProt, IntAct, and STRING, and can be used keyless over a hosted gateway endpoint or run locally over stdio.
      19 npm
      MIT
    Deploy Server
    One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

    TDQS

    A3.7/5.0

    Scored across 1 tool

    Disambiguation5/5

    Only one tool exists, so there is no possibility of confusion between tools. The methods within the tool are clearly distinct and cover separate domains or operations.

    Naming Consistency4/5

    The method names follow a consistent verb_noun pattern (e.g., search_interpro, get_protein_features), but the tool name 'embl_data' is a generic noun that does not convey an action or purpose, resulting in minor inconsistency.

    Tool Count2/5

    With only a single tool for a wide range of bioinformatics APIs, the tool surface is too thin. The multiple methods effectively act as sub-tools, but consolidating them into one tool makes the server feel under-scoped and reduces usability.

    Completeness4/5

    The methods cover essential read operations (search and retrieval) for major EMBL-EBI resources like InterPro, Pfam, UniProt features, and NCBI taxonomy. Minor gaps exist (e.g., no direct method to fetch a Pfam entry by ID), but the core querying needs are addressed.

    Maintenance

    ActivityInactive
    ResponsivenessNo issues

    Resources