AGR MCP Server
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TDQS
Scored across 22 tools
Most tools have distinct purposes, but there is some overlap between search_genes and find_orthologs (both involve gene-related queries across species), and between mine_query, mine_query_builder, and mine_natural_query (all for querying AllianceMine, though they differ in input format). The descriptions help clarify these distinctions, but an agent might occasionally misselect between them.
The naming is mostly consistent with a verb_noun pattern (e.g., get_gene_info, search_genes, mine_create_list), but there are minor deviations like mine_natural_query (which uses 'natural' as an adjective) and the mix of 'get' vs. 'search' prefixes for similar actions. Overall, the pattern is predictable and readable.
With 22 tools, the count feels borderline heavy for a genomics server, though it covers both gene data retrieval and AllianceMine operations. It might overwhelm agents with too many options, but the scope is broad enough to justify a larger set, making it reasonable but not ideal.
The tool set provides comprehensive coverage for the domain of genomic data and AllianceMine interactions. It includes CRUD operations for lists (create, get, delete, add), extensive gene data retrieval (info, expression, diseases, etc.), and multiple query methods (search, templates, natural language, structured), leaving no obvious gaps for agent workflows.