Plan the sections of a paper
lnm_outline_paperPlan a lesion network mapping paper section by section, listing gaps, word budgets, and reporting obligations for each section.
Instructions
Produce a section-by-section plan for a paper of a given design.
The plan gives, per section: the subsections in the order the literature uses them, a word budget, what the section has to accomplish, the reporting elements that must appear in it, and sentence frames to start from. Before the skeleton it lists the gaps: analyses this design normally has to defend that nothing in the study you described covers.
Call lnm_classify_design first if you do not know the design id.
Args:
design: a design id or name, e.g. 'lnm', 'dbs-network', 'convergent'
topic: the symptom, syndrome, or effect being localized, e.g. 'freezing of gait'
cohorts: one string per cohort, e.g. ['14 published lesion cases', '36 ET patients, VIM-DBS']
connectome: the normative connectome, e.g. 'GSP1000 rs-fMRI, n=1000'
analyses_done: analyses already run, e.g. ['leave-one-out cross-validation']
target_journal: used only to remind you to check word and figure limits
Returns: gaps, a skeleton table, and per-section obligations.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| topic | Yes | The symptom, syndrome, or therapeutic effect being localized. | |
| design | Yes | Design id or name. Run lnm_list_designs to see valid ids. | |
| cohorts | No | One entry per cohort, with n and provenance. | |
| connectome | No | Normative connectome name, n, and modality. | |
| analyses_done | No | Analyses already run, for gap detection. | |
| target_journal | No | Target journal, for word and figure limits. | |
| response_format | No | Output format: 'markdown' to read, 'json' for machine processing. | markdown |