Start Embeddings
start_embeddingsCompute sulcal embeddings across all 56 model folds (28 brain regions × 2 hemispheres) for the Champollion MRI-to-embedding pipeline.
Instructions
Launch Stage 4: compute sulcal embeddings across all 56 model folds (28 regions × 2 hemispheres).
profiling: run the embeddings script under cProfile. no_cache: re-extract a models archive, ignoring the cache. legacy: read crops from derivatives/deep_folding-2025 (overrides cortical_version). use_last_checkpoint: evaluate with the native Lightning checkpoint in version_0/checkpoints/ instead of best_model_weights.pt, for regions that have one.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| cpu | No | ||
| masks | No | ||
| legacy | No | ||
| output | No | ||
| regions | No | ||
| run_cka | No | ||
| no_cache | No | ||
| subjects | No | ||
| overwrite | No | ||
| profiling | No | ||
| models_path | Yes | ||
| datasets_root | Yes | ||
| masks_version | No | ||
| cortical_version | No | ||
| use_last_checkpoint | No |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||