phylokit-mcp
Related Servers
Alternatives to phylokit-mcp
No user-submitted related servers found.
Related Servers
- AlicenseAqualityDmaintenanceEnables the generation, mutation, and evolution of DNA and protein sequences using various evolutionary models and phylogenetic algorithms. It supports realistic next-generation sequencing read simulation and population-level evolutionary tracking for bioinformatics research and testing.6BSD 2-Clause "Simplified"
- FlicenseBqualityDmaintenanceA comprehensive Model Context Protocol (MCP) server that provides access to the AlphaFold Protein Structure Database through a rich set of tools and resources for protein structure prediction analysis.1935-
- AlicenseAqualityCmaintenanceMCP server for single-cell lineage tracing analysis, enabling conversational reconstruction, visualization, and heritability analysis of lineage trees using Cassiopeia, pycea, and treedata.18MIT
- FlicenseBqualityDmaintenanceA comprehensive Model Context Protocol (MCP) server for accessing the STRING protein interaction database. This server provides powerful tools for protein network analysis, functional enrichment, and comparative genomics through the STRING API.64-
- FlicenseNot gradedqualityBmaintenanceMCP server for gene family analysis, providing tools for FASTA validation and PlantCARE cis-element prediction, with backend task management for AI agents.-
- AlicenseNot gradedqualityBmaintenanceMCP server for STRING-DB that enables querying protein-protein interaction networks, functional enrichment, and homology mappings.179 npmMIT
TDQS
Scored across 6 tools
Each tool targets a distinct stage or concern in the phylogenetic workflow: alignment, model selection, tree inference, tree comparison, simulation, and capabilities. There is no functional overlap; even the two 'tree' tools are clearly differentiated by purpose (compare topologies vs. infer from data).
Five of six tools follow the consistent verb_noun snake_case pattern (compare_trees, simulate_alignment, infer_tree, select_substitution_model, align_sequences). 'capabilities' breaks the pattern as a bare noun, but it is a standard introspection tool and the deviation is minor.
Six tools is well-scoped for a phylogenetics-focused server; each one earns its place and covers the core pipeline without redundancy or bloat. The count feels deliberately curated rather than padded.
The tool surface covers the complete typical workflow: align raw sequences, select a substitution model, infer a bootstrapped tree, compare trees, and simulate data for validation. The descriptions explicitly point to the next step in the pipeline, and there are no obvious dead ends or missing operations.