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resolve_proteins

Convert protein names or IDs to their standardized STRING database identifiers for accurate protein-protein interaction analysis and network exploration.

Instructions

Resolve protein names to their preferred names in STRING database.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
identifiersYesProtein names or STRING IDs, newline or space-separated
speciesNoNCBI taxon ID
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden of behavioral disclosure. While 'resolve' implies a lookup/mapping operation, it doesn't describe what 'preferred names' means, whether this is a read-only operation, what happens with invalid inputs, or any rate limits/authentication requirements. The description is too minimal for a tool with 2 parameters.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is extremely concise - a single sentence that states the core purpose without any wasted words. It's front-loaded with the essential information and doesn't include unnecessary elaboration.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a tool with 2 parameters, no annotations, and no output schema, the description is insufficiently complete. It doesn't explain what 'resolve' means operationally, what format the results take, or how this differs from similar tools like 'get_string_ids'. The agent would need to guess about the tool's behavior and output.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, so the schema already documents both parameters thoroughly. The description doesn't add any meaningful parameter semantics beyond what's in the schema - it mentions 'protein names' which aligns with the 'identifiers' parameter but provides no additional context about format, limitations, or the 'species' parameter.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose with a specific verb ('resolve') and resource ('protein names'), and specifies the target database ('STRING database'). However, it doesn't explicitly differentiate this tool from its siblings like 'get_string_ids', which might have overlapping functionality.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides no guidance on when to use this tool versus alternatives like 'get_string_ids' or other sibling tools. There's no mention of prerequisites, typical use cases, or exclusions that would help an agent choose appropriately.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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