millimap-mcp
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TDQS
Scored across 12 tools
Most tools have distinct purposes, but the set of marker-related tools (find_markers, get_cluster_markers, genes_for_cell_type, search_genes) may cause some confusion as they all deal with marker genes, though descriptions clarify their specific roles.
Tool names follow a verb_noun pattern in snake_case, which is consistent. However, 'genes_for_cell_type' deviates by starting with a noun instead of a verb, making it a minor inconsistency.
With 12 tools covering clustering, annotation, marker retrieval, QC, and an escape hatch, the count is well-scoped for a single-cell analysis MCP server—each tool earns its place.
The tool surface covers core clustering and annotation but misses direct tools for data loading, normalization, or highly variable gene selection—essential preprocessing steps. The escape hatch partially fills these gaps but reliance on it for key operations indicates notable gaps.