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mahynotch

ChimeraX MCP Server

by mahynotch

show_cartoon

Render atomic models as ribbon or cartoon representations to reveal secondary structure folds.

Instructions

Show ribbon/cartoon representation. Aliases: ribbon, cartoon, secondary structure.

Example: show_cartoon("#1")

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
specNoall

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description carries full burden but fails to disclose effects like replacing existing representations or requiring a loaded structure. Minimal behavioral insight.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is short and includes an example, but lacks necessary detail. It is not verbose, but could be more informative without losing efficiency.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple tool with one parameter and no annotations, the description is incomplete. It omits parameter explanation and behavioral context, leaving the agent underinformed.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters1/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema has 0% description coverage and the description does not explain the 'spec' parameter beyond an example. No type constraints or semantics provided.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool shows ribbon/cartoon representation, with aliases. It distinguishes from sibling visualization tools like show_sticks and show_surface by specifying the representation type.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance is given on when to use this tool versus alternatives (e.g., when to use cartoon vs surface vs sticks). No prerequisites or exclusions mentioned.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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