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smiles_react

Transforms a SMILES molecule by applying a reaction SMARTS pattern, returning the reaction product.

Instructions

Apply a reaction SMARTS to a SMILES

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
molYes
reaction_smartsYes

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries full burden. It fails to disclose expected output, behavior on invalid inputs, or side effects. Even though an output schema exists, the description does not mention what is returned.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Extremely concise single sentence, no wasted words. However, it sacrifices informative content; a slightly longer description could improve clarity without losing conciseness.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the complexity of applying a reaction SMARTS and the presence of an output schema, the description is too minimal. It omits expected output format, error handling, and any usage context, making it incomplete for effective tool selection.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters2/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so description must compensate. It names the parameters ('SMILES', 'reaction SMARTS') but provides no additional semantics like format constraints or examples. The parameter names in the schema are 'mol' and 'reaction_smarts', and the description aligns but adds no value.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the action 'Apply a reaction SMARTS to a SMILES', which specifies the verb and resources. It distinguishes from sibling tools like 'smiles_has_substructure' and 'smiles_info' by focusing on reaction application.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus alternatives, such as when to perform a reaction vs checking substructure. No context about prerequisites or typical use cases.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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