miEAA3 MCP Server
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TDQS
Scored across 4 tools
Each tool has a clearly distinct purpose: listing categories, converting miRNA identifiers, converting miRNA/precursor names, and running over-representation analysis. There is no overlap or ambiguity between these functions, making tool selection straightforward for an agent.
Three tools follow a consistent verb_noun pattern (list_enrichment_categories, mirna_precursor_converter, over_representation_analysis), while one uses a noun_verb_noun pattern (mirbase_version_converter). This minor deviation slightly reduces consistency but the naming remains readable and predictable overall.
With 4 tools, the server is well-scoped for miRNA enrichment analysis, covering key operations like listing categories, identifier conversion, and analysis. Each tool earns its place without feeling excessive or insufficient for the domain.
The toolset covers essential workflows for miEAA, including data preparation (conversions) and analysis (ORA). A minor gap exists in lacking tools for other analysis types (e.g., gene set enrichment), but agents can still perform core tasks effectively with the provided tools.