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Alternatives to Cell Annotation MCP

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    • A
      license
      Not graded
      quality
      D
      maintenance
      Enables deep probabilistic analysis of single-cell omics data using scvi-tools through natural language. Supports SCVI for scRNA-seq analysis, SCANVI for cell type annotation, TOTALVI for multi-modal RNA/protein data, and PEAKVI for scATAC-seq analysis.
      MIT
    • A
      license
      B
      quality
      A
      maintenance
      Enables LLM agents to query the CZ CELLxGENE Census single-cell atlas with ontology-aware filters, cost caps, and full provenance, allowing natural language questions about cell types, tissues, and gene expression.
      13
      MIT
    • A
      license
      Not graded
      quality
      C
      maintenance
      An MCP server that enables scRNA-Seq analysis through natural language, providing tools for data preprocessing, clustering, and biological visualization. It supports both predefined function execution and a flexible code mode powered by a Jupyter backend for automated single-cell transcriptomics workflows.
      16
      BSD 3-Clause