GenePattern MCP Server
Officialby genepattern
Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
| AUTH_HANDLER | No | Full Python path to an AuthHandler class (default: genepattern_mcp._shared.EnvAuthHandler) | genepattern_mcp._shared.EnvAuthHandler |
| FASTMCP_HOST | No | Host interface to bind (HTTP/SSE only) | 0.0.0.0 |
| FASTMCP_PORT | No | Port to listen on (HTTP/SSE only) | 3000 |
| GENEPATTERN_KEY | Yes | Your GenePattern API Bearer token | |
| GENEPATTERN_URL | No | GenePattern server URL (include /gp) | https://cloud.genepattern.org/gp |
| FASTMCP_TRANSPORT | No | Transport protocol: streamable-http, stdio, or sse | streamable-http |
| LOCAL_FILES_ENABLED | No | Enable local file upload/download tools | True |
Capabilities
Server capabilities have not been inspected yet.
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
No tools | |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
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