liftover_coordinate
Read-onlyIdempotent
Convert genomic positions, intervals, or variants between hg19, hg38, and t2t builds to map coordinates to a target reference assembly.
Instructions
Convert a genomic position, interval or variant between genome builds (hg19, hg38, t2t).
Check status: RESOLVED means one result, AMBIGUOUS means several candidates, anything else
means it could not be mapped (see errors). For variants, ref/alt are rebuilt against the target
reference and warnings such as REF_MISMATCH may apply.
Input Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| query | Yes | A position ('chr8:141310715'), an interval ('chr8:141310715-141310716') or a variant ('chr2-23423-A-C', HGVS, rsID). | |
| to_genome | Yes | Genome build to convert to. | |
| from_genome | Yes | Genome build of the input. |
Output Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| input | Yes | ||
| errors | Yes | ||
| status | Yes | RESOLVED, AMBIGUOUS, UNRESOLVED, INVALID, NOT_RECOGNIZED or UNSUPPORTED | |
| warnings | Yes | ||
| to_genome | Yes | ||
| candidates | Yes | ||
| from_genome | Yes |