search_datasets
Search multiple public life-science data repositories at once and retrieve ranked datasets matching your query, with optional filters for organism, data type, and open access.
Instructions
Search all registered open data sources at once and return ranked datasets.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| text | Yes | What the data should contain, e.g. "lung adenocarcinoma scRNA-seq". | |
| sources | No | Restrict to these sources (see list_sources). Default: all. | |
| organism | No | Scientific or common name, e.g. 'Homo sapiens' or 'mouse'. | |
| data_types | No | Only query sources covering any of these data types. | |
| min_samples | No | Drop records with fewer samples. Records whose sample count is unknown (many sources do not report it) are kept. | |
| expand_ontology | No | Also search ontology synonyms of the text (EBI OLS). | |
| limit_per_source | No | Maximum records fetched from each source. | |
| open_access_only | No | Drop records marked controlled-access. Unknown access is kept. |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| query | Yes | ||
| errors | No | ||
| results | Yes | ||
| sources_queried | No |