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map_ids

Map identifiers between UniProt-supported namespaces by specifying source and target databases and a list of IDs.

Instructions

Map identifiers between UniProt-supported namespaces.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
from_dbYes
to_dbYes
idsYes

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
from_dbYesSource identifier namespace.
to_dbYesTarget identifier namespace.
resultsNoMapping from input IDs to resolved identifiers (empty list for no match).
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must carry the full burden. It only mentions 'map identifiers' without disclosing behavioral traits such as id limits, mapping directionality, or side effects.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Single sentence, no wasted words. However, a slight expansion to clarify parameter roles would improve utility without harming conciseness.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Despite having an output schema, the description fails to cover parameter semantics and usage context. For a tool with three undocumented parameters, this is insufficient.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters2/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Input schema has 0% description coverage. The description implies that 'from_db' and 'to_db' are namespaces and 'ids' are identifiers, but it does not explain valid values or formats, leaving ambiguity.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states it maps identifiers between UniProt-supported namespaces, clearly indicating the verb and resource. It distinguishes from sibling tools that fetch entries or sequences. However, it lacks specificity about the mapping operation itself.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus alternatives. The description does not provide context on prerequisites, limitations, or scenarios for exclusion.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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