A
license-
qualityC
maintenanceEnables querying disease/target/drug knowledge graph from Open Targets, supporting searches, profiles, and associations via natural language through the Pipeworx gateway.
Last updated
165
MIT
mcp-wikipathways
by pipeworx-io
Click on "Install Server".
Wait a few minutes for the server to deploy. Once ready, it will show a "Started" state.
In the chat, type
@followed by the MCP server name and your instructions, e.g., "@mcp-wikipathwaysfind pathways related to Alzheimer's disease"
That's it! The server will respond to your query, and you can continue using it as needed.
Here is a step-by-step guide with screenshots.
mcp-wikipathways
WikiPathways MCP — open community pathway database.
Part of Pipeworx — an MCP gateway connecting AI agents to 812+ live data sources.
Tools
Tool | Description |
Related MCP server: reactome-mcp
Quick Start
Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):
{
"mcpServers": {
"wikipathways": {
"url": "https://gateway.pipeworx.io/wikipathways/mcp"
}
}
}Or connect to the full Pipeworx gateway for access to all 812+ data sources:
{
"mcpServers": {
"pipeworx": {
"url": "https://gateway.pipeworx.io/mcp"
}
}
}Using with ask_pipeworx
Instead of calling tools directly, you can ask questions in plain English:
ask_pipeworx({ question: "your question about Wikipathways data" })The gateway picks the right tool and fills the arguments automatically.
More
License
MIT
This server cannot be installed
Maintenance
–Maintainers
–Response time
–Release cycle
–Releases (12mo)
Commit activity
Resources
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Looking for Admin?
If you are the server author, to access and configure the admin panel.
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- Alicense-qualityCmaintenanceEnables AI agents to query the Reactome biological pathway knowledge-base for pathways, participants, and orthologous events using natural language.Last updated15MIT
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