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arkinjo

TogoMCP

by arkinjo
OverviewSchemaSourceRelated ServersDiscussionsAdmin
Python
Remote

IMPORTANT NOTE!!

TogoMCP is now maintained at DBCLS. This repository will no longer be updated.

TogoMCP: MCP server for the RDF Portal databases

This MCP server executes SPARQL queries against various biological/biomedical RDF databases provided at the RDF Portal.

Additional functionalities are also provided that interact with a few REST APIs at various sites.

Installation

  • Python (>= 3.11)

  • uv package manager

Install uv (if not yet installed)

# macOS/Linux
curl -LsSf https://astral.sh/uv/install.sh | sh

# Windows
> powershell -ExecutionPolicy ByPass -c "irm https://astral.sh/uv/install.ps1 | iex"

Install RDFPortal-MCP server

# Clone the repository
git clone https://github.com/arkinjo/togo-mcp.git
cd togo-mcp

# Install dependencies
uv sync

Related MCP server: UniProt MCP Server

Configuration

Claude Desktop Configuration

Change the file paths as appropriate.

macOS: ~/Library/Application Support/Claude/claude_desktop_config.json
Windows: ~\AppData\Roaming\Claude\claude_desktop_config.json

{
    "mcpServers": {
        "togomcp": {
            "command": "{path to uv}/uv",
            "args":[
                "--directory",
                "{path to togo-mcp}/togo-mcp",
                "run",
                "togo-mcp-server"
            ]
        }
    }
}

"Admin" mode

In the above setting, you can also use togo-mcp-admin instead of togo-mcp-server, which includes additional MCP tools for generating new MIE files.

This server cannot be deployed

One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

Maintenance

ActivityInactive
ResponsivenessNo issues

Resources

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