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get_protocol

Retrieve experimental protocol details from protocols.io using ID, URI, or DOI. Get full metadata, step-by-step instructions, and materials list.

Instructions

Retrieve full protocol details from protocols.io.

Parameters

protocol_id : str Protocol identifier - can be a URI (e.g., 'rna-extraction-abc123'), DOI (e.g., '10.17504/protocols.io.xxx'), or numeric ID. include_steps : bool Whether to include step-by-step instructions, defaults to True. include_materials : bool Whether to include materials/reagents list, defaults to True.

Returns

str Formatted markdown with protocol metadata, materials, and steps.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
protocol_idYesProtocol identifier: URI, DOI, or numeric ID from search results
include_stepsNoInclude step-by-step instructions
include_materialsNoInclude materials/reagents list

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must cover behavioral traits. It describes parameters and return value but does not disclose side effects, rate limits, or authentication needs. It is adequate for a simple read operation.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-organized with section headers and parameter listings. However, it is somewhat verbose as it repeats schema information. It is appropriately sized but could be more concise.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has an output schema and full parameter coverage, the description is fairly complete. It lacks error handling or authentication details, but for a simple retrieval tool, it covers the essentials.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, so baseline is 3. The description adds examples for protocol_id and clarifies defaults for boolean parameters, but adds minimal additional meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool retrieves full protocol details from protocols.io, using specific verb 'Retrieve' and resource. It distinguishes from sibling 'search_protocols' by implying retrieval of full details.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies usage after searching for protocols, but does not explicitly state when not to use or mention alternatives. Context is clear but lacks explicit guidance.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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