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biocontext-ai

protocol-mcp

by biocontext-ai
OverviewSchemaRelated ServersScoreDiscussions
Python
Remote

Server Configuration

Describes the environment variables required to run the server.

NameRequiredDescriptionDefault

No arguments

Capabilities

Features and capabilities supported by this server

CapabilityDetails
tools
{
  "listChanged": true
}
prompts
{
  "listChanged": false
}
resources
{
  "subscribe": false,
  "listChanged": false
}
experimental
{
  "tasks": {
    "list": {},
    "cancel": {},
    "requests": {
      "tools": {
        "call": {}
      },
      "prompts": {
        "get": {}
      },
      "resources": {
        "read": {}
      }
    }
  }
}

Tools

Functions exposed to the LLM to take actions

NameDescription
search_protocolsA

Search protocols.io for laboratory protocols.

Parameters

query : str Search term to find protocols. max_results : int Number of results (1-50), defaults to 10.

Returns

str Formatted list of matching protocols with title, DOI, URI, and step count.

get_protocolA

Retrieve full protocol details from protocols.io.

Parameters

protocol_id : str Protocol identifier - can be a URI (e.g., 'rna-extraction-abc123'), DOI (e.g., '10.17504/protocols.io.xxx'), or numeric ID. include_steps : bool Whether to include step-by-step instructions, defaults to True. include_materials : bool Whether to include materials/reagents list, defaults to True.

Returns

str Formatted markdown with protocol metadata, materials, and steps.

Prompts

Interactive templates invoked by user choice

NameDescription

No prompts

Resources

Contextual data attached and managed by the client

NameDescription

No resources

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