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Get Mammalian Phenotype Term

get_mp_term
Read-onlyIdempotent

Retrieve a Mammalian Phenotype ontology term's definition, hierarchy, and top-level systems. Use with find_markers_by_phenotype to connect phenotypes to mouse genes.

Instructions

Return a Mammalian Phenotype (MP) ontology term: id, name, definition, direct parents and children (is_a edges), and the top-level system(s) it rolls up to. Use with find_markers_by_phenotype to go from a phenotype to the mouse genes that model it. Signature: get_mp_term(mp_id).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
mp_idYesA Mammalian Phenotype term id (MP:0005367).

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
successNo
_metaNo
error_codeNo
messageNo
retryableNo
recovery_actionNo
fieldNo
allowed_valuesNo
hintNo
candidatesNo
mp_idNo
nameNo
definitionNo
parentsNo
childrenNo
top_level_systemsNo
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint=true, destructiveHint=false, idempotentHint=true, openWorldHint=true. Description adds return field details and edge type (is_a) but no additional behavioral traits beyond annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two efficient sentences: first defines function and return fields, second provides usage guidance and signature. No filler or redundant information.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given simple tool with one required parameter, 100% schema coverage, rich annotations, and output schema implied by field list, the description is fully adequate for selection and invocation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100% (single mp_id parameter with description and examples). Description repeats parameter in signature but adds no new semantic information. Baseline 3 is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description states specific verb 'Return' and resource 'Mammalian Phenotype (MP) ontology term' with detailed fields (id, name, definition, parents, children, top-level systems). Clearly distinguishes from siblings like find_markers_by_phenotype.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly suggests use with find_markers_by_phenotype to link phenotype to genes. Provides signature. Lacks explicit when-not-to-use but gives good context.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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