clingen-link
by berntpopp
Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
| CLINGEN_LINK_MCP_HOST | No | Bind host. | 127.0.0.1 |
| CLINGEN_LINK_MCP_PATH | No | MCP endpoint path. | /mcp |
| CLINGEN_LINK_MCP_PORT | No | Bind port. | 8000 |
| CLINGEN_LINK_LOG_LEVEL | No | Log level. | INFO |
| CLINGEN_LINK_CACHE_SIZE | No | Service-layer LRU cache size. | 512 |
| CLINGEN_LINK_CORS_ORIGINS | No | Comma-separated allowed CORS origins. | * |
| CLINGEN_LINK_MAX_PAGE_SIZE | No | Maximum page size for search tools. | 100 |
| CLINGEN_LINK_MCP_TRANSPORT | No | Transport: unified / http / stdio. | unified |
| CLINGEN_LINK_SNAPSHOT_PATH | No | Read-only snapshot location. | bundled clingen_link/data/clingen.sqlite.zst |
| CLINGEN_LINK_EREPO_API_BASE | No | ERepo API base (ETL + live drill-down). | https://erepo.clinicalgenome.org/evrepo |
| CLINGEN_LINK_DOSAGE_FTP_BASE | No | Dosage TSV source (ETL). | https://ftp.clinicalgenome.org |
| CLINGEN_LINK_MAX_CONCURRENCY | No | Max concurrent in-flight upstream requests. | 5 |
| CLINGEN_LINK_STDIO_LOG_LEVEL | No | Reduced log level for stdio transport. | WARNING |
| CLINGEN_LINK_CACHE_TTL_MINUTES | No | General service cache TTL. | 60 |
| CLINGEN_LINK_REQUEST_TIMEOUT_S | No | Per-request upstream timeout (seconds). | 30 |
| CLINGEN_LINK_VALIDITY_API_BASE | No | Gene-disease validity API base (ETL + affiliates). | https://search.clinicalgenome.org/api |
| CLINGEN_LINK_QUEUE_WAIT_TIMEOUT_S | No | Max wait for a concurrency slot before fast rate_limited. | 20 |
| CLINGEN_LINK_ACTIONABILITY_API_BASE | No | Actionability API base (ETL + live SEPIO). | https://actionability.clinicalgenome.org/ac |
| CLINGEN_LINK_EREPO_CACHE_TTL_MINUTES | No | ERepo live drill-down cache TTL (keyed to news version). | 720 |
Capabilities
Server capabilities have not been inspected yet.
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
No tools | |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
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