clingen-link
by berntpopp
Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
| CLINGEN_LINK_MCP_HOST | No | Bind host. | 127.0.0.1 |
| CLINGEN_LINK_MCP_PATH | No | MCP endpoint path. | /mcp |
| CLINGEN_LINK_MCP_PORT | No | Bind port. | 8000 |
| CLINGEN_LINK_LOG_LEVEL | No | Log level. | INFO |
| CLINGEN_LINK_CACHE_SIZE | No | Service-layer LRU cache size. | 512 |
| CLINGEN_LINK_CORS_ORIGINS | No | Comma-separated allowed CORS origins. | * |
| CLINGEN_LINK_MAX_PAGE_SIZE | No | Maximum page size for search tools. | 100 |
| CLINGEN_LINK_MCP_TRANSPORT | No | Transport: unified / http / stdio. | unified |
| CLINGEN_LINK_SNAPSHOT_PATH | No | Read-only snapshot location. | bundled clingen_link/data/clingen.sqlite.zst |
| CLINGEN_LINK_EREPO_API_BASE | No | ERepo API base (ETL + live drill-down). | https://erepo.clinicalgenome.org/evrepo |
| CLINGEN_LINK_DOSAGE_FTP_BASE | No | Dosage TSV source (ETL). | https://ftp.clinicalgenome.org |
| CLINGEN_LINK_MAX_CONCURRENCY | No | Max concurrent in-flight upstream requests. | 5 |
| CLINGEN_LINK_STDIO_LOG_LEVEL | No | Reduced log level for stdio transport. | WARNING |
| CLINGEN_LINK_CACHE_TTL_MINUTES | No | General service cache TTL. | 60 |
| CLINGEN_LINK_REQUEST_TIMEOUT_S | No | Per-request upstream timeout (seconds). | 30 |
| CLINGEN_LINK_VALIDITY_API_BASE | No | Gene-disease validity API base (ETL + affiliates). | https://search.clinicalgenome.org/api |
| CLINGEN_LINK_QUEUE_WAIT_TIMEOUT_S | No | Max wait for a concurrency slot before fast rate_limited. | 20 |
| CLINGEN_LINK_ACTIONABILITY_API_BASE | No | Actionability API base (ETL + live SEPIO). | https://actionability.clinicalgenome.org/ac |
| CLINGEN_LINK_EREPO_CACHE_TTL_MINUTES | No | ERepo live drill-down cache TTL (keyed to news version). | 720 |
Instructions
Guidance the server publishes about itself, which clients place ahead of the tool catalog so the model reads it before choosing anything.
This server publishes no instructions, or was last inspected before Glama recorded them.
Capabilities
Server capabilities have not been inspected yet.
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
No tools | |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
This server cannot be deployed
Maintenance
ActivityActive
ResponsivenessResponsive