bertron-mcp
Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||
Capabilities
Features and capabilities supported by this server
| Capability | Details |
|---|---|
| tools | {
"listChanged": true
} |
| prompts | {
"listChanged": false
} |
| resources | {
"subscribe": false,
"listChanged": false
} |
| experimental | {} |
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
| geosearchC | Find genomic and environmental samples near any location on Earth using latitude/longitude coordinates |
| health_checkA | Verify that the BERtron API and database are online and responding correctly |
| bbox_searchB | Find all samples within a rectangular geographic region defined by corner coordinates |
| entity_lookupA | Get comprehensive metadata for a specific biological sample or dataset using its unique identifier |
| advanced_queryB | Execute sophisticated searches with custom filters, field selection, pagination, and sorting options |
| search_by_sourceB | Find samples and datasets from specific DOE research facilities (EMSL, ESS-DIVE, JGI, NMDC, MONET) |
| search_by_typeA | Find specific types of biological or environmental data (samples, sequences, biodata, taxa) |
| search_by_nameC | Search through sample names, project titles, and descriptions using text patterns and keywords |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
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