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Alternatives to bioretrieval-mcp

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      Enables searching PubMed and Europe PMC, fetching article metadata and full text from PMC, Europe PMC, or Unpaywall, resolving citations and identifiers, exploring related articles, and grounding queries in MeSH vocabulary. Runs over stdio, local Streamable HTTP, or a hosted endpoint, exposing 11 tools, a database-info resource, and a research-plan prompt.
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    TDQS

    A4/5.0

    Scored across 3 tools

    Disambiguation5/5

    Each tool targets a clearly different resource and action: EMDB search, UniProt entry retrieval, and GEO methylation series search. There is no realistic overlap in selection, even though EMDB results may contain UniProt cross-references.

    Naming Consistency5/5

    All tools use consistent snake_case verb_noun naming: search_emdb, get_uniprot, search_geo_methylation. The mix of search and get reflects the intended action rather than inconsistent conventions.

    Tool Count5/5

    Three tools is well within a focused retrieval server’s scope, and each covers a distinct biological data source. None appears redundant or gratuitous.

    Completeness3/5

    Coverage is uneven: UniProt has fetch but no search, while EMDB and GEO methylation have search but no dedicated full-entry retrieval beyond returned metadata. These are notable gaps for common retrieval workflows, though partial workarounds exist via cross-references and search metadata.

    Maintenance

    ActivityMaintained
    ResponsivenessNo issues