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Alternatives to eggnog-mcp

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    Related Servers

    • A
      license
      B
      quality
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      maintenance
      Provides access to the STRING protein-protein interaction database for mapping identifiers, retrieving interaction networks, and performing functional enrichment analysis. It enables users to explore protein partners, pathways, and cross-species homology through natural language interactions.
      9
      1
      ISC
    • F
      license
      B
      quality
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      Provides programmatic access to AlphaFold protein structure predictions and UniProt data, enabling users to retrieve protein structures, summaries, and annotations through natural language.
      3
      -
    • A
      license
      C
      quality
      F
      maintenance
      Provides AI-powered access to major biological databases for GWAS and bioinformatics research. Enables natural language queries for protein, gene, variant, pathway, and drug discovery analysis.
      44
      1
      MIT
    • A
      license
      Not graded
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      Enables AI assistants to perform NCBI BLAST sequence similarity searches through natural language, supporting nucleotide and protein searches, custom database creation, and multiple output formats.
      10
      MIT
    • A
      license
      Not graded
      quality
      B
      maintenance
      Enables AI agents to search and retrieve compounds, drugs, diseases, pathways, genes, enzymes, glycans, modules, and KO entries; fetch full parsed flat-file entries by ID; and list database contents through keyless REST tools.
      9 npm
      MIT

    TDQS

    A3.7/5.0

    Scored across 10 tools

    Disambiguation4/5

    Most tools target distinct resources (protein, OG, family, taxid, stats, downloads, search), and descriptions give concrete examples. However, annotate_protein is explicitly a 'convenience wrapper around get_protein' returning overlapping data for the same protein_id, and get_og_content vs get_orthologs/get_protein_family all return species/protein lists with similar shapes, creating mild risk of misselection.

    Naming Consistency5/5

    Consistent snake_case verb_noun pattern throughout (get_*, list_*, search_*, annotate_*). Minor terminology drift between 'orthologous_group' and 'orthologs' but the convention is clear and predictable.

    Tool Count5/5

    10 tools is well-scoped for a read-only database API, with each tool covering a distinct lookup or listing need. No bloat and nothing obviously trivial.

    Completeness4/5

    Core lifecycle is well covered: search, protein annotation, OG detail, OG content, orthologs, family, stats, and downloads. Minor gaps remain (no sequence/FASTA retrieval), and get_taxid_info is effectively a stub that only points to a downloadable file rather than returning the taxonomy data.

    Maintenance

    ActivityMaintained
    ResponsivenessNo issues