eggnog-mcp
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Bio-MCP BLASTofficial
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TDQS
Scored across 10 tools
Most tools target distinct resources (protein, OG, family, taxid, stats, downloads, search), and descriptions give concrete examples. However, annotate_protein is explicitly a 'convenience wrapper around get_protein' returning overlapping data for the same protein_id, and get_og_content vs get_orthologs/get_protein_family all return species/protein lists with similar shapes, creating mild risk of misselection.
Consistent snake_case verb_noun pattern throughout (get_*, list_*, search_*, annotate_*). Minor terminology drift between 'orthologous_group' and 'orthologs' but the convention is clear and predictable.
10 tools is well-scoped for a read-only database API, with each tool covering a distinct lookup or listing need. No bloat and nothing obviously trivial.
Core lifecycle is well covered: search, protein annotation, OG detail, OG content, orthologs, family, stats, and downloads. Minor gaps remain (no sequence/FASTA retrieval), and get_taxid_info is effectively a stub that only points to a downloadable file rather than returning the taxonomy data.