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Scored across 12 tools
Most tools have clearly distinct purposes, but a few overlap: list_phyla is a special case of list_taxa_by_rank, get_children is subsumed by get_taxon_summary, and get_genomes_for_species is a convenience wrapper around get_genomes_for_taxon. Descriptions help clarify intended use, so misselection is unlikely but not impossible.
All tools use snake_case with a predictable verb_noun or verb_object pattern (get_taxonomy, list_phyla, compare_genomes, get_database_stats). The lone exception is 'search', which lacks an explicit noun, but this is a minor deviation from an otherwise consistent convention.
12 tools is well-scoped for a taxonomic and genomic reference database; each tool covers a distinct exploration or retrieval operation without excessive fragmentation. No tool feels redundant enough to remove, and the set is not bloated.
The surface covers search, taxonomy traversal, genome retrieval, comparison, and database statistics, which is comprehensive for a read-only reference database. Minor gaps such as batch operations or sequence retrieval are outside the apparent scope and do not create dead ends.