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Glama
Xuanyu0610

PubMed MCP Server

by Xuanyu0610

Server Configuration

Describes the environment variables required to run the server.

NameRequiredDescriptionDefault
PORTNoPort for Streamable HTTP mode. Default is 8745.8745
PUBMED_EMAILNoOptional email address (recommended) to include in requests to NCBI.
ABSTRACT_MODENoAbstract length: quick (1500 characters) or deep (6000 characters).quick
FULLTEXT_MODENoFull-text download mode: disabled, enabled, or auto.disabled
PUBMED_API_KEYNoOptional NCBI API key for higher rate limits. https://www.ncbi.nlm.nih.gov/account/settings/

Instructions

Guidance the server publishes about itself, which clients place ahead of the tool catalog so the model reads it before choosing anything.

This server publishes no instructions, or was last inspected before Glama recorded them.

Capabilities

Features and capabilities supported by this server

Protocol revision2025-11-25

CapabilityDetails
tools
{}

Tools

Functions exposed to the LLM to take actions

NameDescription
pubmed_searchA

Search PubMed biomedical literature database. Returns articles matching your query with metadata, abstracts, and citations. Supports Boolean operators (AND, OR, NOT), MeSH terms, and field tags like [Title], [Author]. Use format="compact" for quick overviews when browsing, "detailed" for in-depth analysis. Use days_back to limit to recent publications.

pubmed_get_detailsA

Retrieve complete metadata for specific PubMed articles by PMID. Accepts a single PMID or array of PMIDs (up to 20). Returns full article records including abstract, authors, journal, DOI, MeSH terms. Use when you have specific PMIDs from a previous search or citation and need the full record.

pubmed_extract_infoA

Extract specific structured sections from a PubMed article. Use when you need only certain aspects (author details, structured abstract, keywords, DOI) rather than the full record. More token-efficient than get_details for targeted extraction.

pubmed_find_relatedA

Find articles related to a given PubMed article. Discovers similar papers or review articles to build a comprehensive literature picture. Use after identifying a key paper to expand your search in relevant directions.

pubmed_manage_cacheA

View cache statistics or perform maintenance. Use action="stats" to check hit rates and storage usage. Use action="clean" to remove expired entries, or action="clear" to wipe a specific cache layer.

Prompts

Interactive templates invoked by user choice

NameDescription

No prompts

Resources

Contextual data attached and managed by the client

NameDescription

No resources

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