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WormBase MCP Server

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    Deploy Server
    One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

    TDQS

    A3.7/5.0

    Scored across 12 tools

    Disambiguation5/5

    Every tool has a clearly distinct purpose targeting specific biological entities or functions, such as get_gene for genes, get_phenotype for phenotypes, and get_expression for expression patterns. The descriptions explicitly differentiate each tool's scope, with get_entity serving as a fallback for uncovered types, ensuring no ambiguity in tool selection.

    Naming Consistency5/5

    All tool names follow a consistent verb_noun pattern using 'get_' or 'search' prefixes, such as get_disease, get_gene, and search. This uniformity makes the tool set predictable and easy to navigate, with no deviations in naming conventions across the 12 tools.

    Tool Count5/5

    With 12 tools, the server is well-scoped for its biological data domain, covering key entities like genes, proteins, phenotypes, and diseases. Each tool earns its place by addressing specific aspects of WormBase data, avoiding both thin coverage and excessive complexity.

    Completeness5/5

    The tool set provides comprehensive coverage for accessing WormBase data, including CRUD-like retrieval for all major entity types (e.g., genes, proteins, phenotypes) and a search tool for flexible queries. No obvious gaps exist, as get_entity acts as a catch-all for any uncovered types, ensuring complete access to the database.

    Maintenance

    ActivityInactive
    ResponsivenessNo issues

    Resources