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list_interactions

Read-onlyIdempotent

Filter and sort a protein's interactions by kind, type, pathway, and minimum evidence. Returns concise lists to answer targeted questions about interaction types and evidence strength.

Instructions

Filtered, sorted, headline-only list of a protein's interactions.

kind = activates|inhibits|binds|regulates; type = direct|indirect; pathway = a pathway-name substring; min_evidence = minimum supporting papers; sort = evidence|functions|partner. Lighter than get_protein; use it for targeted questions ("best-evidenced inhibitory edges in ERAD"), then drill in with get_interaction(id).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
kindNo
sortNoevidence
typeNo
limitNo
orderNodesc
symbolYes
pathwayNo
min_evidenceNo

Schema Changelog

Changes observed during successful MCP inspections. Dates show when Glama detected each change.

  1. First observedv0.1.1

TDQS

A4.3/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint=true and idempotentHint=true, covering safety. The description adds the behavioral trait 'headline-only list,' which implies condensed output, and mentions it is 'lighter' than get_protein. However, it does not describe pagination behavior, exact response structure, or error conditions. With strong annotations, a 3 is appropriate – it adds some context but not rich behavioral detail.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is efficient, packing purpose, parameter definitions, and usage context into a few lines. The main purpose is front-loaded, and the rest is organized clearly. It earns its length without fluff, though it could be slightly more scannable by separating parameter explanations into a list.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a list tool with strong annotations and a well-explained purpose, the description provides enough to call it correctly. It covers filtering, sorting, and the 'headline-only' nature of output. It lacks specific return format or pagination details, but that is acceptable given the tool's simplicity and the presence of get_interaction for deeper detail.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, so the description must explain parameters. It explicitly defines kind (activates|inhibits|binds|regulates), type (direct|indirect), pathway (substring), min_evidence (minimum papers), and sort (evidence|functions|partner). It does not explain limit, order, or symbol, but symbol is the required protein identifier and limit/order are common and inferable. The explanation of the key filtering parameters is strong, so a 4 is justified.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states a specific verb and resource: 'Filtered, sorted, headline-only list of a protein's interactions.' It explicitly contrasts with siblings by calling itself 'Lighter than get_protein' and directing drill-in to get_interaction, so the agent knows exactly what this tool does and how it differs.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description gives explicit when-to-use guidance: 'use it for targeted questions' with an example, and names the alternative 'get_protein' and the follow-up 'get_interaction(id)'. It also explains the filter parameters (kind, type, pathway, min_evidence, sort) which tell the agent how to tailor the query, leaving no ambiguity about selection.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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