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science-ai-mcp-server

Server Configuration

Describes the environment variables required to run the server.

NameRequiredDescriptionDefault
SCIENCE_AI_API_KEYYesYour saij_… token for authentication
SCIENCE_AI_BASE_URLNoBase URL for Science AI API, default: https://scienceaijournal.comhttps://scienceaijournal.com

Capabilities

Features and capabilities supported by this server

CapabilityDetails
tools
{
  "listChanged": true
}

Tools

Functions exposed to the LLM to take actions

NameDescription
start_writer_pipelineA

Enqueue a writer-pipeline job for an existing WriterSession. Returns immediately with a jobId; the orchestrator-worker claims it within ~5 seconds. Default section is step_7_5 — the auto-chain that replaces the three buttons in Step 7.5. Use get_writer_pipeline_status to poll until status is 'done', 'failed', or 'aborted'. Uses Science AI Journal credits.

get_writer_pipeline_statusA

Return the latest writer-pipeline job for a (sessionId, section). Use after start_writer_pipeline and poll every 5-10 seconds. Terminal statuses: 'done', 'failed', 'aborted'.

check_duplicate_publicationA

Pre-submission duplicate-publication and salami-slicing check. Cross-references the title + abstract against CrossRef, arXiv, medRxiv, bioRxiv, Unpaywall, and a 900k-paper institutional library in ~30 seconds. Returns a status (likely_published, uncertain, or not_found) with a confidence score and message. Free. Use before submission to catch accidental duplicates or to confirm a preprint hasn't been formally published yet.

hakem_review_paperA

Run one of the HAKEM specialist agents (methodology, language, figures, plagiarism, or literature) on a prepared agent prompt and return the structured editorial decision: score (1-10), verdict (Accept / Minor Revision / Major Revision / Reject), summary, strengths, concerns, detailed multi-section review, confidence band, and questions for the authors. Uses Science AI Journal credits. For the full 5-agent + synthesis flow, prefer the web UI at scienceaijournal.com/ai-review.

recommend_journalsA

Recommend ranked target journals for a paper from a ~1,200-venue index. Each result includes a letter grade (A-F), a match percentage, tier (1-3), publisher, open-access status, 2-year mean citedness, predatory-journal flag, and 2-3 example similar papers that landed at that venue. Free — runs locally via FTS5 + topic-RAG, no LLM call. Use when the user asks 'where should I submit this paper' or wants to compare target venues before deciding.

pre_check_paperA

Run a free, zero-LLM-cost pre-submission scoring of an academic paper. Returns predicted publication tier (Tier 1, 2, or 3 probability), the detected research field, and a confidence band. Backed by a local 33,000-paper library via FTS5 BM25. Use this when the user wants a fast sanity-check on whether a paper is ready to submit, or which tier of journal to target. Sub-second response. Free.

find_research_gapsA

Surface research gaps + the most-cited and most-recent papers around a query. Returns cross-paper synthesis gaps first (LLM-derived, grounded in ≥ 2 papers), then catalogue-level single-paper gaps. Plus a field overview and ≤ 50 top-cited and ≤ 50 most-recent papers. Uses Science AI Journal credits; rate-limited to 10 requests/hour per IP. Use for early-stage research discovery, literature gap identification, and proposal scoping.

Prompts

Interactive templates invoked by user choice

NameDescription

No prompts

Resources

Contextual data attached and managed by the client

NameDescription

No resources

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