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Glama

Server Configuration

Describes the environment variables required to run the server.

NameRequiredDescriptionDefault
PUBMED_EMAILNoYour email address (optional, recommended for better API access)
ABSTRACT_MODENoAbstract mode: 'quick' (1500 chars) or 'deep' (6000 chars)quick
FULLTEXT_MODENoFulltext mode: 'disabled', 'enabled', or 'auto'disabled
PUBMED_API_KEYNoYour NCBI API key (optional, for higher rate limits)

Capabilities

Features and capabilities supported by this server

CapabilityDetails
tools
{}

Tools

Functions exposed to the LLM to take actions

NameDescription
pubmed_searchA

Search PubMed biomedical literature database. Returns articles matching your query with metadata, abstracts, and citations. Supports Boolean operators (AND, OR, NOT), MeSH terms, and field tags like [Title], [Author]. Use format="compact" for quick overviews when browsing, "detailed" for in-depth analysis. Use days_back to limit to recent publications.

pubmed_get_detailsA

Retrieve complete metadata for specific PubMed articles by PMID. Accepts a single PMID or array of PMIDs (up to 20). Returns full article records including abstract, authors, journal, DOI, MeSH terms. Use when you have specific PMIDs from a previous search or citation and need the full record.

pubmed_extract_infoA

Extract specific structured sections from a PubMed article. Use when you need only certain aspects (author details, structured abstract, keywords, DOI) rather than the full record. More token-efficient than get_details for targeted extraction.

pubmed_find_relatedA

Find articles related to a given PubMed article. Discovers similar papers or review articles to build a comprehensive literature picture. Use after identifying a key paper to expand your search in relevant directions.

pubmed_manage_cacheA

View cache statistics or perform maintenance. Use action="stats" to check hit rates and storage usage. Use action="clean" to remove expired entries, or action="clear" to wipe a specific cache layer.

Prompts

Interactive templates invoked by user choice

NameDescription

No prompts

Resources

Contextual data attached and managed by the client

NameDescription

No resources

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