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OMOPHub

OMOPHub MCP Server

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by OMOPHub

list_vocabularies

List all OMOP medical vocabularies with concept counts and metadata. Identify available terminology systems such as SNOMED CT, ICD-10-CM, RxNorm, LOINC, and their scope.

Instructions

List all available medical vocabularies in the OMOP standardized vocabulary system with concept counts and metadata. Use this to understand what terminology systems are available (SNOMED CT, ICD-10-CM, RxNorm, LOINC, etc.) and their scope.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
searchNoOptional search term to filter vocabularies by name
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations are provided, so the description must disclose behavioral traits. It correctly indicates this is a read-only listing operation with no destructive side effects. It mentions the output includes concept counts and metadata, giving a clear picture of what to expect. Could add more detail about pagination or sorting, but for a simple list tool this is adequate.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two sentences long with no wasted words. The first sentence states the action and output, the second gives usage guidance. Each sentence serves a clear purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple list tool with one optional parameter and no output schema, the description is complete. It conveys the scope (medical vocabularies), output details (concept counts and metadata), and usage context. No further information is needed for an agent to use this tool correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

There is one optional parameter 'search' with a max length of 200, and schema coverage is 100%. The description does not provide additional semantic detail beyond the schema, such as supported search patterns or case sensitivity. The baseline of 3 is appropriate since the schema already documents the parameter sufficiently.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool lists all available medical vocabularies with concept counts and metadata. It gives specific examples (SNOMED CT, ICD-10-CM) and the verb 'list' with resource 'vocabularies' is unambiguous. Sibling tools like 'search_concepts' or 'get_hierarchy' are distinctly different, so this stands out.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly tells when to use the tool: 'Use this to understand what terminology systems are available and their scope.' It implies a discovery purpose. While it doesn't explicitly state when not to use or list alternatives, the context from sibling tools makes it clear this is for browsing vocabularies, not concepts.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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