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OMOPHub

OMOPHub MCP Server

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by OMOPHub

list_vocabularies

List all medical vocabularies in the OMOP system with concept counts and metadata. Discover available terminology systems like SNOMED, ICD-10, RxNorm, and LOINC.

Instructions

List all available medical vocabularies in the OMOP standardized vocabulary system with concept counts and metadata. Use this to understand what terminology systems are available (SNOMED CT, ICD-10-CM, RxNorm, LOINC, etc.) and their scope.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
searchNoOptional search term to filter vocabularies by name
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description must fully disclose behavior. It mentions returning counts and metadata, but does not specify response format, pagination, or other details. Adequate given simplicity.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences, directly stating purpose and usage context. No redundant or extraneous information.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a list tool with no output schema, description gives reasonable context (counts, metadata, example vocabularies). Sibling tools address concept-level tasks, so no overlap. Could mention if ordering or limits apply, but overall sufficient.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100% with one optional parameter 'search' documented. Description adds no extra meaning beyond the schema, so baseline score of 3 is appropriate.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states it lists all medical vocabularies in the OMOP system with counts and metadata. It distinguishes from siblings like search_concepts or get_concept, which focus on individual concepts.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides explicit usage context: 'Use this to understand what terminology systems are available.' Does not mention when not to use or alternatives, but sibling list suggests other tools for concept-level tasks.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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