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MaxMLang

cxg-census-mcp

by MaxMLang

gene_coverage

Check whether a list of Ensembl gene IDs is present in the Census single-cell atlas for a specified organism.

Instructions

Report whether a list of Ensembl gene IDs is present in Census var.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
gene_idsYes
organismNohomo_sapiens
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided. Description only says 'Report whether... present', implying a boolean output but does not disclose error handling, rate limits, authentication needs, or side effects. Minimal behavioral disclosure.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness3/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Description is very concise at 12 words, but this brevity sacrifices necessary detail. It is not front-loaded with key information beyond the basic purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

No output schema, no annotations, and no explanation of the result format. The tool's behavior with multiple gene IDs or edge cases is unclear. Incomplete for effective use.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters1/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, yet description does not mention or explain either parameter (gene_ids or organism). Parameters are left entirely undocumented for the agent.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states the tool reports presence of Ensembl gene IDs in Census var. Verb 'Report' is acceptable, and resource is specific. However, 'Census var' is ambiguous and not explained.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool versus siblings like census_summary or list_available_values. No context about prerequisites or typical use cases.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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