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KrithikVishal

Biomedical APIs MCP Server

Query dbGaP (Stub)

query_dbgap

Search NIH dbGaP genomic and clinical datasets using credentialed access. Run queries to retrieve study data.

Instructions

NIH dbGaP genomic/clinical datasets (requires credentials)

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
queryYesdbGaP search query

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
messageYes
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

No annotations provided, so description carries full burden. It discloses credential requirement but omits other behavioral traits like read-only/destructive nature, rate limits, or pagination behavior.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness2/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Extremely brief (one sentence) but lacks depth; it does not earn its place as it provides minimal useful information. Conciseness should not come at the cost of completeness.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the simplicity (1 param, output schema exists), the description is too minimal. It fails to explain authentication process, result format, or how to construct queries, leaving agents underinformed.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100% for the single parameter 'query' with a basic description. The tool description adds no additional meaning beyond what the schema provides.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose3/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states the resource (NIH dbGaP genomic/clinical datasets) and implies a query action, but does not explicitly say 'search' or 'retrieve'. It lacks differentiation from sibling query tools like query_ukbiobank.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No guidance on when to use this tool vs alternatives (e.g., query_ukbiobank, query_mimic). Only mentions credential requirement, which is a prerequisite but not a usage guideline.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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