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KrithikVishal

Biomedical APIs MCP Server

Query BindingDB (Stub)

query_bindingdb

Retrieve measured binding affinities between proteins and small molecules from BindingDB. Supports bulk download.

Instructions

BindingDB measured binding affinities (bulk download available)

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
queryYesBindingDB query

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
messageYes
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden. It only mentions bulk download availability but does not disclose other behavioral traits such as rate limits, authentication needs, or the nature of results (e.g., size, format).

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness3/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single sentence, which is concise, but it lacks structure. It is front-loaded with the core purpose, yet every sentence should earn its place; here, the information is minimal.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool has one parameter and an output schema (not shown), the description should explain what the query returns and how it behaves. It fails to provide enough context for an agent to confidently use the tool.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters2/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema coverage is 100% with one parameter, but the description adds no meaningful detail beyond the schema's 'BindingDB query'. It does not explain the expected query syntax, format, or provide examples.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly identifies the resource (BindingDB) and the type of data (measured binding affinities), and mentions a key feature (bulk download available). This distinguishes it from sibling tools like query_crunchbase or query_drugbank, though the verb 'query' is implicit from the tool name.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

There is no guidance on when to use this tool versus alternatives. The description does not mention prerequisites, limitations, or comparisons to other query tools among the siblings.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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