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Related Servers

Alternatives to biocontext

No user-submitted related servers found.

    Related Servers

    • A
      license
      Not graded
      quality
      B
      maintenance
      Enables AI agents to look up approved human genes by official symbol, fuzzy-search symbols, names and aliases, and reverse-map external database identifiers (Entrez, Ensembl, UniProt, OMIM, RefSeq, UCSC) back to canonical gene records with full annotations and cross-references.
      21 npm
      MIT
    • A
      license
      Not graded
      quality
      C
      maintenance
      Enables AI agents to resolve genes, diseases, chemicals, variants and species to normalized ids, search ~36M PubMed abstracts and PMC full texts by free text or entity, and retrieve the machine-extracted relations between them with the supporting sentences and PMIDs. Supports auditing individual relations with full evidence passages and pulling per-article entity annotations with character offsets.
      216 npm
      MIT
    • A
      license
      C
      quality
      D
      maintenance
      Enables AI assistants to query gene annotations, expression, pathways, variants, and more via the MyGene.info API, supporting batch operations and multiple biological data sources.
      26
      MIT
    • A
      license
      Not graded
      quality
      D
      maintenance
      Enables AI agents to query clinical genomics databases, retrieve supporting literature, analyze population genetics, and visualize biological pathways.
      18
      MIT
    • A
      license
      A
      quality
      B
      maintenance
      Enables unified access to 110 life science APIs and databases, including genomics, proteomics, chemistry, literature, and clinical data. Users can query genes, proteins, compounds, pathways, and more through natural language.
      3
      MIT
    • A
      license
      Not graded
      quality
      B
      maintenance
      Enables AI agents to look up molecular interactions from the EBI IntAct database by gene/protein name or UniProt ID, returning detection method, interaction type, organism, PubMed reference, and MI confidence score, along with fast interaction counts. It is keyless and available either through a hosted MCP endpoint, a plain HTTP API, or a local stdio server.
      17 npm
      MIT

    TDQS

    A3.9/5.0

    Scored across 16 tools

    Disambiguation5/5

    Each tool has a clearly distinct purpose: gene resolution, protein/transcript retrieval, GO term lookup, GO annotation, pathway retrieval, disease resolution, literature search, and graph construction/traversal. The two graph tools differ in intent (build a subgraph vs. enumerate paths), and batch_resolve_genes is an explicit batch counterpart to resolve_gene. Descriptions are detailed enough to prevent misselection.

    Naming Consistency5/5

    All tool names use snake_case and follow a verb_noun pattern (e.g., get_go_term, resolve_gene, build_entity_subgraph). The consistent use of action verbs like get_, resolve_, build_, traverse_, find_, and annotate_ makes the set predictable and readable.

    Tool Count4/5

    With 16 tools, the server is slightly above the ideal 3-15 range, but the breadth of biological data sources (genes, proteins, transcripts, pathways, GO, diseases, literature, graphs) justifies each tool. No tool appears redundant or trivial.

    Completeness4/5

    The tool set covers core multi-omics retrieval, including gene/protein/transcript details, orthologs, GO annotations, pathways, disease associations, literature, and graph operations. Minor gaps exist, such as explicit sequence retrieval (FASTA) or variant-level annotation, but the surface is robust for most workflows.

    Maintenance

    ActivityMaintained
    ResponsivenessResponsive