biocontext
Related Servers
Alternatives to biocontext
No user-submitted related servers found.
Related Servers
- AlicenseNot gradedqualityBmaintenanceEnables AI agents to look up approved human genes by official symbol, fuzzy-search symbols, names and aliases, and reverse-map external database identifiers (Entrez, Ensembl, UniProt, OMIM, RefSeq, UCSC) back to canonical gene records with full annotations and cross-references.21 npmMIT
- AlicenseNot gradedqualityCmaintenanceEnables AI agents to resolve genes, diseases, chemicals, variants and species to normalized ids, search ~36M PubMed abstracts and PMC full texts by free text or entity, and retrieve the machine-extracted relations between them with the supporting sentences and PMIDs. Supports auditing individual relations with full evidence passages and pulling per-article entity annotations with character offsets.216 npmMIT
- AlicenseCqualityDmaintenanceEnables AI assistants to query gene annotations, expression, pathways, variants, and more via the MyGene.info API, supporting batch operations and multiple biological data sources.26MIT
- AlicenseNot gradedqualityDmaintenanceEnables AI agents to query clinical genomics databases, retrieve supporting literature, analyze population genetics, and visualize biological pathways.18MIT
- AlicenseAqualityBmaintenanceEnables unified access to 110 life science APIs and databases, including genomics, proteomics, chemistry, literature, and clinical data. Users can query genes, proteins, compounds, pathways, and more through natural language.3MIT
- AlicenseNot gradedqualityBmaintenanceEnables AI agents to look up molecular interactions from the EBI IntAct database by gene/protein name or UniProt ID, returning detection method, interaction type, organism, PubMed reference, and MI confidence score, along with fast interaction counts. It is keyless and available either through a hosted MCP endpoint, a plain HTTP API, or a local stdio server.17 npmMIT
TDQS
Scored across 16 tools
Each tool has a clearly distinct purpose: gene resolution, protein/transcript retrieval, GO term lookup, GO annotation, pathway retrieval, disease resolution, literature search, and graph construction/traversal. The two graph tools differ in intent (build a subgraph vs. enumerate paths), and batch_resolve_genes is an explicit batch counterpart to resolve_gene. Descriptions are detailed enough to prevent misselection.
All tool names use snake_case and follow a verb_noun pattern (e.g., get_go_term, resolve_gene, build_entity_subgraph). The consistent use of action verbs like get_, resolve_, build_, traverse_, find_, and annotate_ makes the set predictable and readable.
With 16 tools, the server is slightly above the ideal 3-15 range, but the breadth of biological data sources (genes, proteins, transcripts, pathways, GO, diseases, literature, graphs) justifies each tool. No tool appears redundant or trivial.
The tool set covers core multi-omics retrieval, including gene/protein/transcript details, orthologs, GO annotations, pathways, disease associations, literature, and graph operations. Minor gaps exist, such as explicit sequence retrieval (FASTA) or variant-level annotation, but the surface is robust for most workflows.