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GeneOntology MCP Server

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    TDQS

    B3.4/5.0

    Scored across 4 tools

    Disambiguation5/5

    Each tool has a clearly distinct purpose with no overlap: get_go_term retrieves specific term details, get_ontology_stats provides statistical summaries, search_go_terms enables keyword-based discovery, and validate_go_id handles identifier validation. The descriptions clearly differentiate between retrieving, searching, validating, and statistical analysis functions.

    Naming Consistency5/5

    All tools follow a consistent verb_noun pattern with snake_case formatting: get_go_term, get_ontology_stats, search_go_terms, validate_go_id. The naming convention is perfectly uniform throughout the set, making the tools predictable and easy to understand.

    Tool Count4/5

    Four tools is reasonable for a GeneOntology server, covering core operations like retrieval, search, validation, and statistics. While slightly minimal, each tool serves a distinct purpose and the count aligns well with the domain's typical query patterns. A few additional tools for relationships or annotations could enhance completeness but aren't essential.

    Completeness3/5

    The tools cover basic query operations well but have notable gaps for a GeneOntology domain. Missing are tools for term relationships (e.g., get_parents, get_children), annotations (e.g., get_annotations_for_term), or ontology traversal. While agents can work with the provided tools, they cannot perform common GO analysis tasks like exploring term hierarchies or retrieving associated genes.

    Maintenance

    ActivityInactive
    ResponsivenessNo issues